Search the NucleaRDB

 PROTEIN SEARCH 

Protein search help

This search form contains a number of fields, all of which are optional (although at least one field is needed to perform a search). The search terms you enter are 'ANDed' together, meaning that the proteins that are found comply with ALL the terms you have specified.

Id's and accession codes

The identifiers in this database correspond to the ID fields in UniProt records and records from other databases. These look like 'adrb2_human' and 'opsd_bovin'. To search for entries like 'P07550' use the accession code field.

Gene names

A large number of proteins is linked to a gene, for which you can search using the 'gene' box. Searching is case insensitive.

Descriptions

Most proteins have a short description of their function. These descriptions can be searched by using the description field. Searching is case insensitive and wildcards are used on both sides of your query, so 'rhodop' and 'opsin' will both match a description containing the word 'Rhodopsin'.

Species

You can search for proteins from certain species by entering a (part of) the scientific name of the species. If you would like to search for human proteins, entering 'homo sapiens' in the species search field would do just that.

Families

Using the families search box you can search for proteins that have a specific family name. This search is done both on all the subfamily levels: searching for 'amine' will return all proteins in the amine protein family (as well as proteins from protein families which have amine in their family name). Searching is case insensitive and wildcards are used on both sides of your query, so 'adrenoceptor' will match all the beta-adrenoceptor and alpha-adrenoceptor families

Mutant data

Selecting the option 'has mutant data' will return only proteins for which there is mutant data available.

Structure data

Selecting the option 'has structure data' will return only proteins for which there is structure data available.

Oligomer data

Selecting the option 'has oligomer data' will return only proteins for which there is oligomerization data available.

Ligand binding data

Selecting the option 'has ligand data' will return only proteins for which there is ligand binding data available.