PrionDB: Cross-References

2004, PrionDB.

The available databanks for the cross-references :

BLOCKS : most highly conserved regions in groups of proteins

URL : http://www.blocks.fhcrc.org/

DDBJ : DNA Data Bank of Japan

URL : http://www.ddbj.nig.ac.jp/

DictyDB : Dictyostelium discoideum biological information

URL : http://probe.nalusda.gov:8300/cgi-bin/query?dbname=dictydb

DIP : Database of Interacting Proteins

URL : http://ampere.mbi.ucla.edu:8801/help.html

EMBL : Nucleotide sequence database (EMBL-EBI)

URL : http://www.ebi.ac.uk/htbin/expasyfetch?

FLYBASE : Drosophila genome database

URL : http://flybase.bio.indiana.edu/

GenBank : Nucleotide sequence database (NCBI)

URL : http://www.ncbi.nlm.nih.gov/

GeneCards : information on human genes, protein and diseases

URL : http://bioinformatics.weizmann.ac.il/cards/

HSSP : Homology-derived secondary structure of proteins

URL : http://www.ibc.wustl.edu:80/hhs/

Human Gene Map : A Gene Map of the Human Genome

URL : http://www.ncbi.nlm.nih.gov/genemap/

IMR : Induced Mutant Resources

The IMR maintains an online database to provide information about mice strains. This information includes a description of the mutant phenotype, husbandry requirements, outside investigators.

URL : http://lena.jax.org/resources/documents/imr/

InterPro : Integrated resource of protein families, domains and functional sites

URL : http://www.ebi.ac.uk/interpro/

MGD : Mouse Genome Database

It contains information on mouse genetic markers, molecular segments, phenotypes, comparative mapping data, experimental mapping data, and graphical displays for genetic, physical, and cytogenetic maps.

URL : http://www.informatics.jax.org/index.html

OMIA : Online Mendelian Inhertance in Animals

Database of the genes and phenes that have been documented in a wide range of animal speciesother than those for which databases already exist (human, rat and mouse).

URL : http://www.angis.org.au/Databases/BIRX/omia/

OMIM : Online Mendelian Inheritance in Man (MIM)

Catalog of human genes and genetic disorders.

URL : http://www3.ncbi.nlm.nih.gov/Omim/

PDB : Brookhaven Protein Data Bank (PDB)

URL : http://www.pdb.bnl.gov/

Pfam : Pfam protein domain database

URL : http://www.sanger.ac.uk/Pfam/

PIR : Protein sequence database of the Protein Information Resource

URL : http://www2.ncbi.nlm.nih.gov/cgi-bin/pir

PRESAGE : Collaborative resource for structural genomics

URL : ttp://presage.berkeley.edu/

PRINTS : Protein Motif fingerprint database

URL : http://bioinf.man.ac.uk/dbbrowser/PRINTS/

ProDom : Protein domain database

URL : http://protein.toulouse.inra.fr/prodom.html

PROSITE : Dictionary of sites and patterns in proteins

URL : http://www.expasy.ch/sprot/prosite.html

ProtoMap : an automatic hierarchical classification of SWISS-PROT proteins

URL : http://protomap.stanford.edu/

SGD : Saccharomyces Genome Database

URL : http://genome-www.stanford.edu/Saccharomyces/

SWISS-2DPAGE : Human 2D Gel Protein Database (SIB)

URL : http://www.expasy.ch/ch2d/

SWISS-PROT : Protein Sequence Database (SIB)

URL : http://www.expasy.ch/sprot/

TRANSFAC : Transcription factor database

URL : http://transfac.gbf.de/TRANSFAC/

WORMPEP : Caenorhabditis elegans genome sequencing project protein database (Sanger Centre)

URL : http://www.sanger.ac.uk/Projects/C_elegans/wormpep/

YPD : Yeast protein database

URL : http://www.proteome.com/YPDhome.html

M. Mokrane, F.Horn (priondbcmbi.ru.nl), 17-Jun-2004