PrionDB: Extraction of mutation data from the literature

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This data was extracted from Medline abstracts and full texts (when available) in an automated manner.

The table below describes different point mutations at a given position and provides links to other documents. The sentence(s) where the point mutations in PRIO_MOUSE at position 209 were found are listed after the table.


Point mutations at position V209 in PRIO_MOUSE

ProteinPRIO_MOUSE (P04925)    Gene: Prnp,Prn-p    (other point mutations)Swiss-Prot
Cross-reference table
Family page
PositionV209
General numbering (PrionDB) -
DomainNot determined
Family alignments Mammalian prion proteins
Prion proteins (PRP, PRNP)
Other point mutations at the same position Position 210 in Mammalian prion proteins family
Position 210 in Prion proteins (PRP, PRNP) family
Reference #1Liemann S, Glockshuber R
Biochemistry 1999 Mar 16;38(11):3258-67.
Medline
Text sourceHTML and PDF full texts
Point mutationV209I (True positive)
Cited point mutationV210I,Val210Ile
Reference #2Stewart RS, Harris DA
J Biol Chem 2001 Jan 19;276(3):2212-20.
Medline
Text sourceHTML full text
Point mutationV209I (True positive)

Relevant sentences

Reference #2 (Stewart RS et al.): V209I
  • The following mutations were introduced into the wild-type PrP cDNA using polymerase chain reaction as described previously (14 ): PG11 (six-octapeptide insertion) , PG14 (eight-octapeptide insertion) , K109I / H110I , 3AV (Ala --> Val at 112 , 114 , and 117) , A116V , D177N , V179I , F197S , E199K , and V209I

  • The human homologues of the mutations are associated with the following familial prion diseases: Creutzfeldt-Jakob disease (PG11 , PG14 , V179I , E199K , V209I) , Gerstmann-Sträussler syndrome (A116V , F197S) , and fatal familial insomnia (D177N)

  • However , five of the pathogenic PrPs (PG11 , PG14 , D177N , F197S , and E199K) do in fact assume a protease-resistant form that resembles PrP Sc when expressed in transfected CHO and BHK cells (2 , 23 ) , 2 while three of mutants (A116V , V179I , and V209I) are protease-sensitive and display other properties characteristic of PrPC.3 This comparison makes it clear that there is no correlation between the efficiency with which a mutation promotes conversion to a PrP Sc-like state in cell culture and its potency in inducing CtmPrP

Reference #1 (Liemann S et al.): V210I
  • ------------------------------------------------------------------------ Table 1: Thermodynamic Stabilities of mPrP(121-231) Variants , mPrP(121-231) Wild Type , and Full-Length mPrP(23-231) Wild Type at pH 7.0 and 25 (image)C mPrP protein prion disease phenotype (image)G(image) fold (kJ mol-1)a (image)(image)G(image) fold (variant - wild type) b cooperativity (kJ mol-1 M-1)a [urea]1 / 2 (M) a mPrP(121-231) wt -29.7 ± 1.0 4.8 ± 0.2 6.2 mPrP(23-231) wt -25.5 ± 1.0 4.2 ± 1.9 4.1 ± 0.2 6.3 M129V polymorphism (human) -28.2 ± 1.0 1.4 ± 2.0 4.5 ± 0.2 6.3 D178N / M129 FFI -22.5 ± 0.7 7.2 ± 1.7 4.7 ± 0.1 4.8 D178N / V129 CJD -21.7 ± 0.9 8.0 ± 1.8 4.5 ± 0.2 4.9 V180I GSS -27.6 ± 0.8 2.1 ± 1.7 4.5 ± 0.1 6.2 T183A CJD -10.4 ± 2.1 19.3 ± 3.1 3.5 ± 0.5 3.0 T190V polymorphism (mouse) -30.3 ± 1.5 -0.7 ± 2.4 4.8 ± 0.2 6.4 F198S GSS -19.4 ± 0.8 10.3 ± 1.7 4.4 ± 0.2 4.5 E200K CJD -29.1 ± 1.5 0.6 ± 2.4 4.9 ± 0.3 5.9 R208H CJD -23.7 ± 1.5 6.0 ± 2.5 4.3 ± 0.3 5.6 V210I CJD -28.6 ± 1.6 1.1 ± 2.6 4.5 ± 0.3 6.3 Q217R GSS -20.8 ± 0.8 8.9 ± 1.7 4.5 ± 0.2 4.7 a The thermodynamic stabilities were measured by urea-induced equilibrium transitions (Figure 5)

  • Table 1: Thermodynamic Stabilities of mPrP(121-231) Variants , mPrP(121-231) Wild Type , and Full-Length mPrP(23-231) Wild Type at pH 7.0 and 25 °C mPrP protein prion disease phenotype G°fold (kJ mol-1)a G°fold (variant - wild type)b cooperativity (kJ mol-1 M-1)a [urea]1 / 2 (M)a mPrP(121-231) wt - -29.7 ( 1.0 - 4.8 ( 0.2 6.2 mPrP(23-231) wt - -25.5 ( 1.0 4.2 ( 1.9 4.1 ( 0.2 6.3 M129V polymorphism (human) -28.2 ( 1.0 1.4 ( 2.0 4.5 ( 0.2 6.3 D178N / M129 FFI -22.5 ( 0.7 7.2 ( 1.7 4.7 ( 0.1 4.8 D178N / V129 CJD -21.7 ( 0.9 8.0 ( 1.8 4.5 ( 0.2 4.9 V180I GSS -27.6 ( 0.8 2.1 ( 1.7 4.5 ( 0.1 6.2 T183A CJD -10.4 ( 2.1 19.3 ( 3.1 3.5 ( 0.5 3.0 T190V polymorphism (mouse) -30.3 ( 1.5 -0.7 ( 2.4 4.8 ( 0.2 6.4 F198S GSS -19.4 ( 0.8 10.3 ( 1.7 4.4 ( 0.2 4.5 E200K CJD -29.1 ( 1.5 0.6 ( 2.4 4.9 ( 0.3 5.9 R208H CJD -23.7 ( 1.5 6.0 ( 2.5 4.3 ( 0.3 5.6 V210I CJD -28.6 ( 1.6 1.1 ( 2.6 4.5 ( 0.3 6.3 Q217R GSS -20.8 ( 0.8 8.9 ( 1.7 4.5 ( 0.2 4.7 a The thermodynamic stabilities were measured by urea-induced equilibrium transitions (Figure 5)

Reference #1 (Liemann S et al.): Val210Ile
  • Lane 1 , molecular mass standards ; 2 , wild-type mPrP(121-231) before induction with IPTG ; 3 , wild-type mPrP(121-231) 18 h after induction (same as for the variants shown in the following lanes) ; 4 , Met129Val ; 5 , Met129 / Asp178Asn ; 6 , Met129Val / Asp178Asn ; 7 , Val180Ile ; 8 , Thr183Ala ; 9 , Thr190Val ; 10 , Phe198Ser ; 11 , Glu200Lys ; 12 , Arg208His ; 13 , Val210Ile ; 14 , Gln217Arg

  • Like mPrP(121-231) wild type (37) , the TSE-related variants Val180Ile , Glu200Lys , Arg208His , and Val210Ile as well the polymorphism variants Met129Val and Thr190Val were produced as soluble proteins in the periplasm of E

  • Both polymorphism variants Met129Val and Thr190Val as well as the TSE-related variants Glu200Lys and Val210Ile have the same stability as mPrP(121-231) wild type within experimental error ((image)G(image)fold ~ -29 kJ mol-1 ; Table 1)

  • The valine side chains at positions 180 and 210 both contribute to the hydrophobic protein core , but their replacement by the bulkier isoleucine side chains in the variants Val180Ile and Val210Ile barely affects the stability of mPrP(121-231)

  • For example , the observation that the amino acid replacement Val210Ile has no effect on the intrinsic stability of mPrP(121-231) suggests similar tendencies of wild type and mutant PrP C to be converted into PrP Sc (89) , but in case of the exchange Glu200Lys , which does not affect the stability either , only the mutant PrP is converted into the protease-resistant form (87)

  • Both polymorphism variants Met129Val and Thr190Val as well as the TSE-related variants Glu200Lys and Val210Ile have the same stability as mPrP(121-231) wild type within experimental error ( G°fold -29 kJ mol-1 ; Table 1)


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F.Horn (priondbcmbi.ru.nl), 22-Aug-2005