PrionDB: Extraction of mutation data from the literature

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This data was extracted from Medline abstracts and full texts (when available) in an automated manner.

The table below describes different point mutations at a given position and provides links to other documents. The sentence(s) where the point mutations in PRIO_HUMAN at position 219 were found are listed after the table.


Point mutations at position E219 in PRIO_HUMAN

ProteinPRIO_HUMAN (P04156)    Gene: PRNP    (other point mutations)Swiss-Prot
Cross-reference table
Family page
PositionE219
General numbering (PrionDB) -
DomainNot determined
Family alignments Mammalian prion proteins
Prion proteins (PRP, PRNP)
Other point mutations at the same position Position 219 in Mammalian prion proteins family
Position 219 in Prion proteins (PRP, PRNP) family
Reference #1Zuegg J, Gready JE
Biochemistry 1999 Oct 19;38(42):13862-76.
Medline
Text sourceHTML and PDF full texts
Point mutationE219K (True positive)
Reference #2Perrier V, Kaneko K, Safar J, Vergara J, Tremblay P, DeArmond SJ, Cohen FE, Prusiner SB, Wallace AC
Proc Natl Acad Sci U S A 2002 Oct 1;99(20):13079-84.
Medline
Text sourceHTML full text
Point mutationE219K (True positive)
Reference #3Mead S, Stumpf MP, Whitfield J, Beck JA, Poulter M, Campbell T, Uphill JB, Goldstein D, Alpers M, Fisher EM, Collinge J
Science 2003 Apr 25;300(5619):640-3.
Medline
Text sourceHTML full text
Point mutationE219K (True positive)
Cited point mutationGlu219Lys,Glu219
Reference #4Soldevila M, Andres AM, Blancher A, Calafell F, Ordonez M, Pumarola M, Oliva B, Aramburu J, Bertranpetit J
Neurosci Lett 2004 Jan 30;355(3):157-60.
Medline
Text sourceHTML full text
Point mutationE219K (True positive)
Reference #5Crozet C, Lin YL, Mettling C, Mourton-Gilles C, Corbeau P, Lehmann S, Perrier V
J Cell Sci 2004 Nov 1;117(Pt 23):5591-7. Epub 2004 Oct 19.
Medline
Text sourceHTML full text
Point mutationE219K (True positive)
Reference #6Ishida C, Okino S, Kitamoto T, Yamada M
J Neurol Neurosurg Psychiatry 2005 Mar;76(3):325-9.
Medline
Text sourceHTML full text
Point mutationE219K (Not yet checked)
Cited point mutationGlu219Lys
Reference #7Tanaka Y, Minematsu K, Moriyasu H, Yamaguchi T, Yutani C, Kitamoto T, Furukawa H
J Neurol Neurosurg Psychiatry 1997 May;62(5):454-7.
Medline
Text sourceabstract
Point mutationE219K (True positive)

Relevant sentences

Reference #1 (Zuegg J et al.): E219K
  • The amino acid residues in black boxes are mutation sites known to be associated with inherited forms of PrP diseases in humans [CJD , D178N:129V (3) , V180I (3) , T183A (3) , E200K (3) , R208H (3) , V210I (3) , and M232R (3) ; GSS , P102L (3) , P105L (3) , A117V (3) , Y145Stop (3) , H187R (14) , F198S (3) , D202N (13) , Q212P (13) , and Q217R (3) ; FFI , D178N:129M (3) ; schizophrenia , N171S (12) ] , while in light gray boxes residues involved in some polymorphisms influencing these diseases are shown [M129V (3) , E219K (11) ]

Reference #2 (Perrier V et al.): E219K
  • Naturally occurring polymorphic variants of PrP , Q171R and E219K , known to render sheep and humans resistant to scrapie and Creutzfeldt-Jakob disease , respectively (16-18 ) , were found to act as dominant negatives in scrapie-infected neuroblastoma cells (19 , 20 )

Reference #3 (Mead S et al.): E219K
  • Heterozygosity at a different PRNP polymorphism , Glu219 replaced by Lys (E219K) (10 ) , is also associated with resistance to sporadic CJD in Japan (11 )

  • The E219K polymorphism was found in Japan and other populations in the Indian subcontinent and East Asia

  • In total , we found only six intermediate frequency polymorphisms in our screen: five coding changes , M129V , E219K , N171S , G142S , 1-octapeptide repeat deletion , but only one intermediate frequency silent change at Ala117 , A117A (Table 1 ) (9 )

  • ------------------------------------------------------------------------ Population n Frequency of human PRNP polymorphisms (%) ------------------------------------------------------------------------ M129V E219K N171S G142S 1-OPRD A117A ------------------------------------------------------------------------ African     Yemeni Hadramout 15 27 0 0 6 0 3     Yemeni Sena 22 32 0 0 0 2 5     Cameroon 39 35 0 8 0 - 9     Jamaican 100 32 0 5 3 30 0 South Asian     Sri Lankans 35 23 13 0 0 0 1     Non-UP Indians 88 21 5 0 0 2 2     UP Indians 64 28 6 0 0 0 3 East Asian     Japanese 36 1 7 0 0 - 0     Taiwan (5 populations) 70 3 3 0 0 0 0 Pacific     PNG (Madang) 83 30 1 0 0 0 0     PNG (Fore) 48 55 0 0 0 0 0     Fiji (Taveuni) 10 5 - - - 5 0     Fiji (others) 18 17 - - - 3 0     Vanuatu (Port Olry) 33 5 13 0 0 8 0     Vanuatu (Maewo) 32 17 8 0 0 13 0     Tonga 22 14 7 0 0 0 0 European     Turkish 61 48 0 0 0 3 4     CEPH parents 122 38 0 0 0 1 3     Georgian Jews 74 26 0 0 0 0 3 South American     Columbian ------------------------------------------------------------------------ 148 ------------------------------------------------------------------------ 41 ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ The McDonald and Kreitman (MK) test compares the number of silent and coding nucleotide changes between two species with polymorphisms within a species in a 2 by 2 contingency table (15 )

Reference #4 (Soldevila M et al.): E219K
  • An increasing number of point , missense and insertion / deletion mutations in PRNP have been identified as causing disease (CJD , GSSD , FFI) or altered susceptibility (e.g. M129V and E219K) , or may be without apparent effect (e.g. synonymous variant A117A)

Reference #5 (Crozet C et al.): E219K
  • By taking advantage of the `prion-resistant' polymorphisms Q171R and E219K that naturally exist in sheep and humans , respectively , we have evaluated a therapeutic approach of lentiviral gene transfer

  • Kaneko et al. introduced the Q171R sheep mutation and E219K human mutation in the mouse Prnp gene (MoPrPQ167R and MoPrPQ218K respectively) (Kaneko et al. , 1997(image) )

Reference #7 (Tanaka Y et al.): E219K
  • OBJECTIVE: A new variant of Gerstmann-Straussler-Scheinker disease (GSS) was reported , which had a substitution of glutamate to lysine at codon 219 (E219K) in addition to a P102L mutation on the same allele of the PrP gene

  • The absence of Congo red staining prion protein plaques is probably attributable to E219K polymorphism on the same allele of the PrP gene.

Reference #3 (Mead S et al.): Glu219
  • Heterozygosity at a different PRNP polymorphism , Glu219 replaced by Lys (E219K) (10 ) , is also associated with resistance to sporadic CJD in Japan (11 )

Reference #6 (Ishida C et al.): Glu219Lys
  • Takase K , Furuya H , Murai H , et al. A case of Gerstmann-Sträussler-Scheinker syndrome (GSS) with late onset-A haplotype analysis of Glu219Lys polymorphism in PrP gene-


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F.Horn (priondbcmbi.ru.nl), 22-Aug-2005