PrionDB: Extraction of mutation data from the literature

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This data was extracted from Medline abstracts and full texts (when available) in an automated manner.

The table below describes different point mutations at a given position and provides links to other documents. The sentence(s) where the point mutations in PRIO_HUMAN at position 188 were found are listed after the table.


Point mutations at position T188 in PRIO_HUMAN

ProteinPRIO_HUMAN (P04156)    Gene: PRNP    (other point mutations)Swiss-Prot
Cross-reference table
Family page
PositionT188
General numbering (PrionDB) -
DomainNot determined
Family alignments Mammalian prion proteins
Prion proteins (PRP, PRNP)
Other point mutations at the same position Position 188 in Mammalian prion proteins family
Position 188 in Prion proteins (PRP, PRNP) family
Reference #1Windl O, Giese A, Schulz-Schaeffer W, Zerr I, Skworc K, Arendt S, Oberdieck C, Bodemer M, Poser S, Kretzschmar HA
Hum Genet 1999 Sep;105(3):244-52.
Medline
Text sourceabstract
Point mutationT188R (True positive)
Reference #2Lorenz H, Windl O, Kretzschmar HA
J Biol Chem 2002 Mar 8;277(10):8508-16.
Medline
Text sourceHTML and PDF full texts
Point mutationT188K (True positive)
Point mutationT188R (True positive)
Reference #3Mastrangelo P, Serpell L, Dafforn T, Lesk A, Fraser P, Westaway D
FEBS Lett 2002 Dec 4;532(1-2):21-6.
Medline
Text sourcePDF full text
Point mutationT188K (True positive)
Point mutationT188R (True positive)
Reference #4Gambetti P, Kong Q, Zou W, Parchi P, Chen SG
Br Med Bull 2003;66:213-39.
Medline
Text sourcePDF full text
Point mutationT188K (True positive)
Point mutationT188R (True positive)

Relevant sentences

Reference #2 (Lorenz H et al.): T188K
  • Two Creutzfeldt-Jakob disease-associated PrP mutants , PrP T188K and PrP T188R , revealed a secretory pathway to the cell membrane and PrP Sc-like properties , i.e. enhanced proteinase K resistance and detergent insolubility similar to other mutant PrPs associated with familial prion diseases

  • Among these PrP mutants , there were three , GFP-PrP Q159 Stop , GFP-PrP T187K , and GFP-PrP T187R (corresponding to human PrP Q160 Stop , T188K , T188R) , that have so far never been cellularly examined and which were assayed in this study most intensively

  • Biochemical as well as cellular data have been described for four of the seven disease-related PrP mutants , i.e. the three full-length PrP mutants PrP P102L , PrP D178N , PrP E200K (7 , 19 ) and the truncated molecule PrP Y145 Stop (20 ) but not for PrP Q160 Stop , PrP T188K , and PrP T188R (human PrPs)

  • Two newly described human pathogenic PrP mutants , PrP T188K and PrP T188R , are associated with familial forms of Creutzfeldt-Jakob disease (28 , 33 ) , albeit histopathological characterizations are missing up to now

  • GFP-PrP chimera with mouse PrPa Human PrP Phenotype P101L P102L GSS W144Stopb Y145Stop GSS Q159Stop Q160Stop EODc D177N D178N FFI T187K T188K CJD T187R T188R CJDd E199K E200K CJD a Mouse PrP contains methionine at position 128 , which corresponds to codon 129 in human PrP , a polymorphic site encoding either methionine or valine

Reference #3 (Mastrangelo P et al.): T188K
  • These include T188R , T188K , T188A , V203I , R208H and M232R (see also main text)

Reference #4 (Gambetti P et al.): T188K
  • Similarly , PrP Prions for physicians British Medical Bulletin 2003 ; 66 Table 2 Genotype and phenotype of familial CJD and FFI (reprinted with permission from Kong et al52.) Genotype Onset (years) Duration Clinical and pathological features Familial CJD P105T 30­42 NA * NA ** NA R148H­129M 63 18 months * Like sCJDMV2 ** Like sCJDMV2 D178N­129V 26­56 9­51 months * Dementia , ataxia , myoclonus , extrapyramidal and pyramidal signs ** Spongiosis , neuronal loss and astrogliosis in the cerebral cortex (most severe) , striatum , and thala mus (least severe) , while the cerebellum is spared V180I­129M 66­85 1­2 years * Similar to typical sCJD but with a slower progression ** Like typical sCJD T183A­129M 45 4 years * Personality changes followed by dementia and Parkinsonism ** Atrophy with spongiform degeneration in the cerebral cortex and , to a lesser extent , in the basal ganglia T188A­129M 82 4 months * Like sCJDMM1 ** Im munohistochemistry for PrP negative , no im munoblot T188K 59 * Dysphasia , rapidly progressive dementia , and negative family history ** NA T188R * NA ** NA E196K­129M 63­77 ~1 year * Rapidly progressive dementia , ataxia , no PSW on EEG ** NA E200K­129M 35­66 2­41 months * Similar to typical sCJD ; atypical signs such as supranuclear palsy and peripheral neuropathy in some cases ** Like typical sCJD V203I­129M 69 ~1 month * Sudden confusion hallucinations , abnormal motor functions , myoclonus , PSW on EEG , negative family history ** NA H208R­129M 60 7 months * Like typical sCJD ** Like typical sCJD V210I­129M 49­70 3­5 months * Like typical sCJD ** Like typical sCJD E211Q­129M 42­81 3­32 months * Like typical sCJD , PSW on EEG ** NA M232R­129M 55­70 4­24 months * Like typical sCJD ** Like typical sCJD FFI D178N­129M 20­71 6­33 months * Reduction of total sleep time , enacted dreams , sympathetic hyperactivity , myoclonus , ataxia ; late dementia , pyramidal and extrapyramidal signs in the cases with a relatively long duration (> 1 year) ** Preferential thalamic and olivary atrophy ; spongiform changes in the cerebral cortex in the subjects with a duration of symptoms longer than 1 year *Clinical and **pathological features

  • Q160Stop­129M103 , E196K­129M101 , V203I­129M101 , T188K103 , and probably P238S104 , T188R103 , 104 , and P105T (http: / / www.mad-cow.org / prion_point_ mutations.html) display some signs of neurodegeneration

Reference #1 (Windl O et al.): T188R
  • Two novel missense mutations (T188R and P238S) and several silent polymorphisms were found , demonstrating the quality of our screening procedure based on a modified version of the single-stranded conformational polymorphism technique

Reference #2 (Lorenz H et al.): T188R
  • Two Creutzfeldt-Jakob disease-associated PrP mutants , PrP T188K and PrP T188R , revealed a secretory pathway to the cell membrane and PrP Sc-like properties , i.e. enhanced proteinase K resistance and detergent insolubility similar to other mutant PrPs associated with familial prion diseases

  • Among these PrP mutants , there were three , GFP-PrP Q159 Stop , GFP-PrP T187K , and GFP-PrP T187R (corresponding to human PrP Q160 Stop , T188K , T188R) , that have so far never been cellularly examined and which were assayed in this study most intensively

  • Biochemical as well as cellular data have been described for four of the seven disease-related PrP mutants , i.e. the three full-length PrP mutants PrP P102L , PrP D178N , PrP E200K (7 , 19 ) and the truncated molecule PrP Y145 Stop (20 ) but not for PrP Q160 Stop , PrP T188K , and PrP T188R (human PrPs)

  • Two newly described human pathogenic PrP mutants , PrP T188K and PrP T188R , are associated with familial forms of Creutzfeldt-Jakob disease (28 , 33 ) , albeit histopathological characterizations are missing up to now

  • GFP-PrP chimera with mouse PrPa Human PrP Phenotype P101L P102L GSS W144Stopb Y145Stop GSS Q159Stop Q160Stop EODc D177N D178N FFI T187K T188K CJD T187R T188R CJDd E199K E200K CJD a Mouse PrP contains methionine at position 128 , which corresponds to codon 129 in human PrP , a polymorphic site encoding either methionine or valine

  • d The T188R / 129V haplotype is linked to CJD

  • No disease-linked phenotype has been described for T188R / 129M

Reference #3 (Mastrangelo P et al.): T188R
  • These include T188R , T188K , T188A , V203I , R208H and M232R (see also main text)

Reference #4 (Gambetti P et al.): T188R
  • Similarly , PrP Prions for physicians British Medical Bulletin 2003 ; 66 Table 2 Genotype and phenotype of familial CJD and FFI (reprinted with permission from Kong et al52.) Genotype Onset (years) Duration Clinical and pathological features Familial CJD P105T 30­42 NA * NA ** NA R148H­129M 63 18 months * Like sCJDMV2 ** Like sCJDMV2 D178N­129V 26­56 9­51 months * Dementia , ataxia , myoclonus , extrapyramidal and pyramidal signs ** Spongiosis , neuronal loss and astrogliosis in the cerebral cortex (most severe) , striatum , and thala mus (least severe) , while the cerebellum is spared V180I­129M 66­85 1­2 years * Similar to typical sCJD but with a slower progression ** Like typical sCJD T183A­129M 45 4 years * Personality changes followed by dementia and Parkinsonism ** Atrophy with spongiform degeneration in the cerebral cortex and , to a lesser extent , in the basal ganglia T188A­129M 82 4 months * Like sCJDMM1 ** Im munohistochemistry for PrP negative , no im munoblot T188K 59 * Dysphasia , rapidly progressive dementia , and negative family history ** NA T188R * NA ** NA E196K­129M 63­77 ~1 year * Rapidly progressive dementia , ataxia , no PSW on EEG ** NA E200K­129M 35­66 2­41 months * Similar to typical sCJD ; atypical signs such as supranuclear palsy and peripheral neuropathy in some cases ** Like typical sCJD V203I­129M 69 ~1 month * Sudden confusion hallucinations , abnormal motor functions , myoclonus , PSW on EEG , negative family history ** NA H208R­129M 60 7 months * Like typical sCJD ** Like typical sCJD V210I­129M 49­70 3­5 months * Like typical sCJD ** Like typical sCJD E211Q­129M 42­81 3­32 months * Like typical sCJD , PSW on EEG ** NA M232R­129M 55­70 4­24 months * Like typical sCJD ** Like typical sCJD FFI D178N­129M 20­71 6­33 months * Reduction of total sleep time , enacted dreams , sympathetic hyperactivity , myoclonus , ataxia ; late dementia , pyramidal and extrapyramidal signs in the cases with a relatively long duration (> 1 year) ** Preferential thalamic and olivary atrophy ; spongiform changes in the cerebral cortex in the subjects with a duration of symptoms longer than 1 year *Clinical and **pathological features

  • Q160Stop­129M103 , E196K­129M101 , V203I­129M101 , T188K103 , and probably P238S104 , T188R103 , 104 , and P105T (http: / / www.mad-cow.org / prion_point_ mutations.html) display some signs of neurodegeneration


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F.Horn (priondbcmbi.ru.nl), 22-Aug-2005