2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: Q9VVM9_DROME
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence AE003522_93
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 3399.44 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
Q9VVM9_DROME 1 MEAVQAAAAATSSGGSSGSVPGSGSGSASKLIKTEPIDFEMLHLEENER
MEAVQAAAAATSSGGSSGSVPGSGSGSASKLIKTEPIDFEMLHLEENER
MEAVQAAAAATSSGGSSGSVPGSGSGSASKLIKTEPIDFEMLHLEENER
AE003522_93 1 agggcgggggattggttgagcgtgtgtgtacaaagcagtgacccggagc
tactaccccccccggccggtcgcgcgcccattacactatattataaaag
gggcgaagtaaacaatacttgtctcatagagcgcgctctgggtgggcag
Q9VVM9_DROME 50 QQDIEREPSSSNSNSNSNSLTPQRYTHVQVQTVPPRQPTGLTTPGGTQK
QQDIEREPSSSNSNSNSNSLTPQRYTHVQVQTVPPRQPTGLTTPGGTQK
QQDIEREPSSSNSNSNSNSLTPQRYTHVQVQTVPPRQPTGLTTPGGTQK
AE003522_93 148 ccgagcgcaaaaaaaaaaataccctacgcgcagcccccagcaacggaca
aaatagacgggagagagagtccagacatatactccgaccgtcccggcaa
ggtcggggccctccctcctgccgacacggggcgaacacatgcgctccgg
Q9VVM9_DROME 99 VILTPRVEYVQQRATSSTGGGMKHVYSQQQGTAASRSAPPETTALLTTT
VILTPRVEYVQQRATSSTGGGMKHVYSQQQGTAASRSAPPETTALLTTT
VILTPRVEYVQQRATSSTGGGMKHVYSQQQGTAASRSAPPETTALLTTT
AE003522_93 295 gacaccggtgcccgaatagggaacgtacccgaggtctgccgaagccaaa
tttccgtaataagccgccgggtaatagaaagccccgccccacccttccc
ctgttcagcgagacctcattgggcaccaggcttagactacgcgcagcct
Q9VVM9_DROME 148 SGTPQIIITRTLPSNQHLSRRHSASPSALHHYQQQQPQRQQSPPPLHHQ
SGTPQIIITRTLPSNQHLSRRHSASPSALHHYQQQQPQRQQSPPPLHHQ
SGTPQIIITRTLPSNQHLSRRHSASPSALHHYQQQQPQRQQSPPPLHHQ
AE003522_93 442 tgaccaaaacacctaccctccctgactgccctccccccccctccccccc
cgccatttcgctccaaatcggaccgccctaaaaaaacagaacccctaaa
gcaagtcctacacctgcggcttgctcccgcccggggggtgaggaggcca
Q9VVM9_DROME 197 QQQQQQHVRVIRDGRLYDEATVVVAARRHSVSPPPLHHHSRSAPVSPVI
QQQQQQHVRVIRDGRLYDEATVVVAARRHSVSPPPLHHHSRSAPVSPVI
QQQQQQHVRVIRDGRLYDEATVVVAARRHSVSPPPLHHHSRSAPVSPVI
AE003522_93 589 cccccccgcgacggcctgggagggggccctgtccccccctatgcgtcga
aaaaaaatgttgaggtaaacctttccggactcccctaaacgccctcctt
ggggggtccgcctcggctacgaggtctgtgggaaagccccaggcgtggc
Q9VVM9_DROME 246 ARRGGAAAYMDQQYQQRQTPPLAPPPPPPPPPPPPPPPQQQQQQYISTG
ARRGGAAAYMDQQYQQRQTPPLAPPPPPPPPPPPPPPPQQQQQQYISTG
ARRGGAAAYMDQQYQQRQTPPLAPPPPPPPPPPPPPPPQQQQQQYISTG
AE003522_93 736 gacgggggtagcctccccacccgccccccccccccccccccccctatag
cggggcccataaaaaagaccctccccccccccccccccaaaaaaatccg
cgctttcatgtgatgagggaggaagggtaaggaaagacagggagccctt
Q9VVM9_DROME 295 VPPPTAAARKFVVSTSTRHVNVIASNHFQQQQQQHQAQQHQQQHQQHQQ
VPPPTAAARKFVVSTSTRHVNVIASNHFQQQQQQHQAQQHQQQHQQHQQ
VPPPTAAARKFVVSTSTRHVNVIASNHFQQQQQQHQAQQHQQQHQQHQQ
AE003522_93 883 gcccagggcatggaaaaccgagagtactccccccccgcccccccccccc
tcccccccgatttgcgcgatattccaataaaaaaaacaaaaaaaaaaaa
taacgagtggtgtcccgacttgccctctaaggggcaaggtgggtggtga
Q9VVM9_DROME 344 HQQHVIASVSSSSSSSAIGSGGSSSSHIFRTPVVSSSSSSNMHHQQQQQ
HQQHVIASVSSSSSSSAIGSGGSSSSHIFRTPVVSSSSSSNMHHQQQQQ
HQQHVIASVSSSSSSSAIGSGGSSSSHIFRTPVVSSSSSSNMHHQQQQQ
AE003522_93 1030 ccccgagagataaattgagtggttttcatcacggtaaaaaaaccccccc
aaaattcgtgcgggccctgcggccccattgccttcgggggataaaaaaa
tggtgccctttcccagctaacctttgcctcgcgtcccccctgctggaga
Q9VVM9_DROME 393 QQQSSLGNSVMRPPPPPPPPKVKHASSSSSGNSSSSNTNNSSSSSNGEE
QQQSSLGNSVMRPPPPPPPPKVKHASSSSSGNSSSSNTNNSSSSSNGEE
QQQSSLGNSVMRPPPPPPPPKVKHASSSSSGNSSSSNTNNSSSSSNGEE
AE003522_93 1177 ccctacgatgacccccccccagacgtataagataaaaaaaaaaaaaggg
aaacgtgacttgccccccccataaccgcgggacgggacaagggggagaa
ggagcgccggggatgggtgcgcacccccccccgccccccccccccccgg
Q9VVM9_DROME 442 PSSSIPDLEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKI
PSSSIPDLEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKI
PSSSIPDLEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKI
AE003522_93 1324 ctatacgcgtggaagctcgtggagtgtctggcttggtagttcctaccaa
ccgctcatatagccttggtggaaccgtaagtacgaggagttggctaaat
gtcgtttaactccaggcctcgtgcctctccgtccgtcgaccccccgagc
Q9VVM9_DROME 491 QYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK
QYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK
QYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK
AE003522_93 1471 ctcctaaacctaaccaacactcttccaatagggaacgggctgcgcacga
aagcgcaaaaggttgtagaggaaggtaagtctgtggactgtggtcagaa
gtcgccgtggcctgcctctttatccgagctcgcgtcttgttacgggcag
Q9VVM9_DROME 540 ARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV
ARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV
ARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV
AE003522_93 1618 gcacggaccaacacgcccgcgagcggcccccgggccgccgatgtaagag
cgttcctaagcaaggaagctccataaacgttccttgcatacgatcaaat
gtcggcgagccgtccggaccccggtcgacccccggccccgctgccgggc
Q9VVM9_DROME 589 SAMRQRARDCPSYSMPTLLACPLNPAPELQSEQEFSQRFAHVIRGVIDF
SAMRQRARDCPSYSMPTLLACPLNPAPELQSEQEFSQRFAHVIRGVIDF
SAMRQRARDCPSYSMPTLLACPLNPAPELQSEQEFSQRFAHVIRGVIDF
AE003522_93 1765 tgacccgcgtctttacaccgtccacgcgcctgcgttcctgcgacggagt
cctgagcgagccactccttcgctacccatacaaatcagtcattggttat
ggggggggtcccccgcatgctggccctagaggggcggtcccatccgcct
Q9VVM9_DROME 638 AGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQV
AGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQV
AGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQV
AE003522_93 1912 ggaacgtcccacggataccaggctggctgccatatgttaataatcagcg
cgttcgtattcaaaatcttacgttactttgttgttacctacttgtagat
ccgtcccggccgctgcgcgggaccccgtgcgccgtcggacacctatcgg
Q9VVM9_DROME 687 MRRDAIQNGANARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLITPDR
MRRDAIQNGANARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLITPDR
MRRDAIQNGANARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLITPDR
AE003522_93 2059 accggacaggagctcggtatatggcaataacagggagcttgagcaacgc
tggactaagcacgtttacctatcagtactatcacatgttgcttttccag
gagtgcgcactcccggcccctcggcgcggcgatcgacgcccctgtggtc
Q9VVM9_DROME 736 PGLRNLELIEKMYSRLKGCLQYIVAQNRPDQPEFLAKLLETMPDLRTLS
PGLRNLELIEKMYSRLKGCLQYIVAQNRPDQPEFLAKLLETMPDLRTLS
PGLRNLELIEKMYSRLKGCLQYIVAQNRPDQPEFLAKLLETMPDLRTLS
AE003522_93 2206 cgtcacgcagaattccagtcctaggcaacgccgtcgatcgaacgccaca
cgtgatattaatacgtaggtaattcaagcaacattcattactcatgctg
ctgccgggcgggcgacgccggctccgtgctgcgcgcggggggctgccgc
Q9VVM9_DROME 785 TLHTEKLVVFRTEHKELLRQQMWSMEDGNNSDGQQNKSPSGSWADAMDV
TLHTEKLVVFRTEHKELLRQQMWSMEDGNNSDGQQNKSPSGSWADAMDV
TLHTEKLVVFRTEHKELLRQQMWSMEDGNNSDGQQNKSPSGSWADAMDV
AE003522_93 2353 accagacggtcagcagcccccattagggaaaggccaatctgatgggagg
ctacaattttgcaaaattgaatgctaagaagagaaaacccgggcactat
cgccgagatcccgcggggcggggcggccccctcggcggcgccggtcgcg
Q9VVM9_DROME 834 EAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALASSAP
EAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALASSAP
EAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALASSAP
AE003522_93 2500 gggaaccgtgtaagtggcgtgacaatcccggtcctcccccctgcgatgc
accagctgctcgcaccataaggcggcacagtctccccaaaccctcgccc
ggcgtgtcgagctgcccgccctgctggagcgtgcggtgagcgtgccgtt
Q9VVM9_DROME 883 LLAATLSGGCPLRNRANSGSSGDSGAAEMDIVGSHAHLTQNGLTITPIV
LLAATLSGGCPLRNRANSGSSGDSGAAEMDIVGSHAHLTQNGLTITPIV
LLAATLSGGCPLRNRANSGSSGDSGAAEMDIVGSHAHLTQNGLTITPIV
AE003522_93 2647 ccggactggtcccacgatgtaggtggggagaggtcgccacagcaaacag
ttccctcgggctgagcacgcggacgccatattgcacatcaagtctcctt
gggccccaatcgccgctcccctccaatggtctcgcatccgcggacggtg
Q9VVM9_DROME 932 RHQQQQQQQQQIGILNNAHSRNLNGGHAMCQQQQQHPQLHHHLTAGAAR
RHQQQQQQQQQIGILNNAHSRNLNGGHAMCQQQQQHPQLHHHLTAGAAR
RHQQQQQQQQQIGILNNAHSRNLNGGHAMCQQQQQHPQLHHHLTAGAAR
AE003522_93 2794 cccccccccccagacaagctcataggcgatcccccccccccctaggggc
gaaaaaaaaaatgttaacacgataggactgaaaaaacataaatccgccg
acgggaaggggcaacttgtcccgtgacggcgagggcaagcccgacatcc
Q9VVM9_DROME 981 YRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAA
YRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAA
YRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAA
AE003522_93 2941 taacgtcagtgagtgagaagtaggatggattttacctaggggcgtaggg
agatacccacgtacgaaaaagactgcgggccgcgcgcgtaactaggacc
cagatgcgtgctggccggcgcgggtggatcgcctgtctgttggccctcc
Q9VVM9_DROME 1030 ANHNQVVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAP
ANHNQVVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAP
ANHNQVVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAP
AE003522_93 3088 gacacggcccccaggtgtcgctccctaaaccaccagggacgcacgccgc
caaaattaacatgttctcctgccacccggatagattaatcttagttacc
ctctggggtgggtggcgaatcgcgccccctggagtggtgcgggcgggtc
Q9VVM9_DROME 1079 PLYDTNSLMDEAYKPHKKFRALRHREFETAEADASSSTSGSNSLSAGSP
PLYDTNSLMDEAYKPHKKFRALRHREFETAEADASSSTSGSNSLSAGSP
PLYDTNSLMDEAYKPHKKFRALRHREFETAEADASSSTSGSNSLSAGSP
AE003522_93 3235 cctgaatcagggtaccaatcgccccgtgagggggaatatgtaacaggac
ctaacacttaacaacaaatgctgagataccacacggcccgcagtgcggc
tgctccgggcgccggcgacgcggtcgcgccggtcctctccgccgtcctg
Q9VVM9_DROME 1128 RQSPVPNSVATPPPSAASAAAGNPAQSQLHMHLTRSSPKASMASSHSVL
RQSPVPNSVATPPPSAASAAAGNPAQSQLHMHLTRSSPKASMASSHSVL
RQSPVPNSVATPPPSAASAAAGNPAQSQLHMHLTRSSPKASMASSHSVL
AE003522_93 3382 ccacgcaaggaccctggaggggacgcacccaccacaacagtagatctgc
gagctcagtccccccccgcccgaccagatatatcgggcacctcgcactt
agtacgctgcgcgaggccccattccgcggcgcgcccccgcggccgcggg
Q9VVM9_DROME 1177 AKSLMAEPRMTPEQMKRSDIIQNYLKRENSTAASSTTNGVGNRSPSSSS
AKSLMAEPRMTPEQMKRSDIIQNYLKRENSTAASSTTNGVGNRSPSSSS
AKSLMAEPRMTPEQMKRSDIIQNYLKRENSTAASSTTNGVGNRSPSSSS
AE003522_93 3529 gatcaggccaacgcaacagaacattacgaaaggaaaaagggacacaaat
cacttcacgtccaataggattaaatagaagcccggccagtgaggcgggc
cgtcgcggcggcggggccttcaccggcgccaaccccctcgccctccccc
Q9VVM9_DROME 1226 TPPPSAVQNQQRWGSSSVITTTCQQRQQSVSPHSNGSSSSSSSSSSSSS
TPPPSAVQNQQRWGSSSVITTTCQQRQQSVSPHSNGSSSSSSSSSSSSS
TPPPSAVQNQQRWGSSSVITTTCQQRQQSVSPHSNGSSSSSSSSSSSSS
AE003522_93 3676 accctggcaccctgaatgaaaatccccctgtccaagtatatatatatat
cccccctaaaagggggcttcccgaagaactccagagcgcgcgcgcgcgc
aggaggcgtggtgcccggcccccggcggcgggccctccctgctcccctg
Q9VVM9_DROME 1275 SSSSTSSNCSSSSASSCQYFQSPHSTSNGTSAPASSSSGSNSATPLLEL
SSSSTSSNCSSSSASSCQYFQSPHSTSNGTSAPASSSSGSNSATPLLEL
SSSSTSSNCSSSSASSCQYFQSPHSTSNGTSAPASSSSGSNSATPLLEL
AE003522_93 3823 ttttattatatatgaatcttctcctaaagaagcgatatgtaagacccgc
cccccccaggcgccgggaataccaccgagcgcccgcgcgcagcccttat
acccacccccccgccccgtcgggccccccctaggcctgagcccgcggag
Q9VVM9_DROME 1324 QVDIADSAQPLNLSKKSPTPPPSKLHALVAAANAVQRYPTLSADVTVTA
QVDIADSAQPLNLSKKSPTPPPSKLHALVAAANAVQRYPTLSADVTVTA
QVDIADSAQPLNLSKKSPTPPPSKLHALVAAANAVQRYPTLSADVTVTA
AE003522_93 3970 cggaggtgcccattaatcacccaaccgcggggaggcatcattgggagag
atatcaccactatcaaccccccgatacttcccactagacctccatctcc
ggcttcgggtctgcgagcgggccggctggccctctagtcagccccagac
Q9VVM9_DROME 1373 SNGGPPSAAASPAPSSSPPASVGSPNPGLSAAVHKVMLEA
SNGGPPSAAASPAPSSSPPASVGSPNPGLSAAVHKVMLEA
SNGGPPSAAASPAPSSSPPASVGSPNPGLSAAVHKVMLEA
AE003522_93 4117 taggcctgggacgcaaaccgaggtcacgcagggcagacgg
caggccccccgcccgggcccgtgccacgtgcctaatttac
ctcttgggggtggccctgggtgccctgcgcccgcgagggg
//
cmbi.kun.nl), 18-Feb-2005