2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: Q9U1U2_CAEEL
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence CEY69H2_10
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 854.24 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
Q9U1U2_CAEEL 1 MSSDLPAAPSDLPSTSSNLLCTVCGAPASGRRYGAAAACLACIVFFRRS
MSSDLPAAPSDLPSTSSNLLCTVCGAPASGRRYGAAAACLACIVFFRRS
MSSDLPAAPSDLPSTSSNLLCTVCGAPASGRRYGAAAACLACIVFFRRS
CEY69H2_10 1 attgccggctgcctattacctagtggcgagactgggggtcgtagttcct
tccatcccccatcccccattgctggcccggggagccccgtcgttttggc
gacttatgacttccaacctccaccttacctgacaccccctccccccgaa
Q9U1U2_CAEEL 50 VLRKIHYTCQALGRCEITVASRCVCRYCRMQKCLAAGMDPRAIQIRDLL
VLRKIHYTCQALGRCEITVASRCVCRYCRMQKCLAAGMDPRAIQIRDLL
VLRKIHYTCQALGRCEITVASRCVCRYCRMQKCLAAGMDPRAIQIRDLL
CEY69H2_10 148 gcaaactatcgcgatgaaggtctgtcttaacattgggagccgacacgcc
ttgataacgactgggatctccggtggaggtaagtccgtacgctatgatt
caagcccctgaacgtgttaatattcgctaggacggtggtttaaacgctt
Q9U1U2_CAEEL 99 GPRSLSSRLSSRRNLDFSPILDLTDFLSLQRTQCSSGNQKCFQQTSREA
GPRSLSSRLSSRRNLDFSPILDLTDFLSLQRTQCSSGNQKCFQQTSREA
GPRSLSSRLSSRRNLDFSPILDLTDFLSLQRTQCSSGNQKCFQQTSREA
CEY69H2_10 295 gcaatttatttccacgttcatgtagtcaccaactatgacattccatagg
gcggtccgtccggatatccttatcattgtagcaggcgaaagtaaccgac
gagcagaaacatgtatttgtgcatttgcaagcgcctacaatcgattaaa
Q9U1U2_CAEEL 148 TSSDINSSLKLAIEHANSWALKFNFYENFTEKTSILSEFAIGFMLIDQA
TSSDINSSLKLAIEHANSWALKFNFYENFTEKTSILSEFAIGFMLIDQA
TSSDINSSLKLAIEHANSWALKFNFYENFTEKTSILSEFAIGFMLIDQA
CEY69H2_10 442 attgaattcacgagcgattgcatattgatagaatattgtgagtacagcg
cccatacctatctaacacgctatataaatcaaccttcatctgttttaac
ctccacataaaccgtatagtgattttatcgaatatagatccatgactga
Q9U1U2_CAEEL 197 FKTAEEAENGFWLLQNGTFLVENEHKSYSKYVSEILNSIAVPFKNLKIE
FKTAEEAENGFWLLQNGTFLVENEHKSYSKYVSEILNSIAVPFKNLKIE
FKTAEEAENGFWLLQNGTFLVENEHKSYSKYVSEILNSIAVPFKNLKIE
CEY69H2_10 589 taagggggagttcccagattggagcatttatgtgacataggctaacaag
taccaacaagtgttaagctttaaaaacacaatcattactctctaatata
catgaatatccgcgatgttgcatgcaccaatgtaaccaaatgcatgata
Q9U1U2_CAEEL 246 EFECVILKILLFLSGGCRKIFKFWENPLKFSANSLQNHRDLAPHRKYCF
EFECVILKILLFLSGGCRKIFKFWENPLKFSANSLQNHRDLAPHRKYCF
EFECVILKILLFLSGGCRKIFKFWENPLKFSANSLQNHRDLAPHRKYCF
CEY69H2_10 736 gtgtgataatctttggtcaatattgactattgatccacagcgcccattt
atagtttatttttcggggattatgaactatccactaaagatccagaagt
gtgcgtgatggtgatgcaattatgattaatactcgatcgttttccgttc
Q9U1U2_CAEEL 295 KLLTEHRSPPEAGEIILLLSSIRCVIKSFYNVTRISDIFNVENFDDDVK
KLLTEHRSPPEAGEIILLLSSIRCVIKSFYNVTRISDIFNVENFDDDVK
KLLTEHRSPPEAGEIILLLSSIRCVIKSFYNVTRISDIFNVENFDDDVK
CEY69H2_10 883 accagccaccggggaatccataatgaatttagaaatgataggatgggga
attcaaggccacgatttttgctggttactaatcgtcattataataaata
ggcggcgctaacgaatagccatgtcagatttataattttttattcctta
Q9U1U2_CAEEL 344 VVLVE
VVLVE
VVLVE
CEY69H2_10 1030 ggcgg
tttta
tatta
//
cmbi.kun.nl), 18-Feb-2005