2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: Q8AVK3_XENLA
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence BC042224_3
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 1135.13 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
Q8AVK3_XENLA 1 MRLSKALIDMDMADYTEALDPAYTTLEFENMQVLSIGTDTSTSDVTSLS
MRLSKALIDMDMADYTEALDPAYTTLEFENMQVLSIGTDTSTSDVTSLS
MRLSKALIDMDMADYTEALDPAYTTLEFENMQVLSIGTDTSTSDVTSLS
BC042224_3 1 aactagtagagaggtaggtgcgtaacgtgaacgttagagatatggaaca
tgtcacttatatcaacactaccacctataatattctgcaccccatcgtg
gagcatgacgtggttaaagtttcccgatatgatgttatccctatgatct
Q8AVK3_XENLA 50 ASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRF
ASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRF
ASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRF
BC042224_3 148 gtaaagaatttgatggagagactggtatggtagttaaagaaacatttat
ccagtgtactgctggagccgaaagccggaggagttgggtgaaatacggt
cactcctctgccttgcagtcactgtccccccgcccggttgaccgcacgc
Q8AVK3_XENLA 99 SRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDS
SRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDS
SRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDS
BC042224_3 295 aactgggagaaactcttccaattaggaaagggcagcgaaaaaatatgga
ggagttaaaagaaggaggtaagtgcgtaaactaaagagtgcggcgaaag
caattgtgcaacgtgccggggtcgtaggaatagtggcgatggggttacc
Q8AVK3_XENLA 148 SLPSINVLIQAEVLSQQITSSVGVLNTDIRGKKIACIIDVCDSMKQQLL
SLPSINVLIQAEVLSQQITSSVGVLNTDIRGKKIACIIDVCDSMKQQLL
SLPSINVLIQAEVLSQQITSSVGVLNTDIRGKKIACIIDVCDSMKQQLL
BC042224_3 442 atctaagtacgggctccaattgggtaagaagaaagtaaggtgtaacccc
gtcctatttacattcaatccctgttacatggaatcgttatgactaaatt
tagcttcataaattcagaccatgggcacaacggccccacgttcgagggg
Q8AVK3_XENLA 197 VLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLL
VLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLL
VLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLL
BC042224_3 589 gtggtgatacgttgcccggcggctcgcgggctccggaaataatagatcc
tttagcaatcctgatctaaatcttgcacgaatttgccagctttaatttt
cggggagtcgtctatagtcggtgagacagacgttgtaggaggtacagtc
Q8AVK3_XENLA 246 GNDRLIPRNCPELEVGRVAVRILDELVLPFQELQIDDNEYACLKAIIFF
GNDRLIPRNCPELEVGRVAVRILDELVLPFQELQIDDNEYACLKAIIFF
GNDRLIPRNCPELEVGRVAVRILDELVLPFQELQIDDNEYACLKAIIFF
BC042224_3 736 gagccaccatcgcgggcgggaacggcgcctcgccaggagtgtcagaatt
gaagttcgagcatatggtctgttaatttctaatataaaaacgtactttt
atcactagttaacagccgagaagtagttccagtgctctacgcgatcatt
Q8AVK3_XENLA 295 DPDAKGLSDPTKIKRMRYQVQVSLEDYINDRQYDSRGRFGDLLLLLPTL
DPDAKGLSDPTKIKRMRYQVQVSLEDYINDRQYDSRGRFGDLLLLLPTL
DPDAKGLSDPTKIKRMRYQVQVSLEDYINDRQYDSRGRFGDLLLLLPTL
BC042224_3 883 gcggagtagcaaaaaaatcgcgacggtaagcctgtagatggccctccac
acacagtgaccatagtgaatatgtaaataagaaacgggtgatttttcct
cttcatactacgcgaggcgggccggtcctttgtcaaagtgtctcgctgg
Q8AVK3_XENLA 344 QSITWQMIEQIQFVKLFGMAKIDNLLQEMLLGGSANEASHTHHHLHPHL
QSITWQMIEQIQFVKLFGMAKIDNLLQEMLLGGSANEASHTHHHLHPHL
QSITWQMIEQIQFVKLFGMAKIDNLLQEMLLGGSANEASHTHHHLHPHL
BC042224_3 1030 caaatcaagcactgactgagaagacccgaccggtgaggtcaccctcccc
agtcgattaatattattgtcataattaatttggccaaccacaaatacat
gccagggcgacgttgcttgcgtccggaggctgttatatacctctgcgtg
Q8AVK3_XENLA 393 VQDHLATNVIVANNTLPSQLHNGQMSTPETPQPSPPAGSGAEQYKIVHG
VQDHLATNVIVANNTLPSQLHNGQMSTPETPQPSPPAGSGAEQYKIVHG
VQDHLATNVIVANNTLPSQLHNGQMSTPETPQPSPPAGSGAEQYKIVHG
BC042224_3 1177 gcgccgaagaggaaacctcccagcatacgaccctccggtgggctaagcg
taaatccatttcaactccataagatcccaccacccccgcgcaaaattag
tattaaacttaccctgacatctaggtaagtcaatattcagaggtataca
Q8AVK3_XENLA 442 TIASINKQPTSIPQSTITKQEAM
TIASINKQPTSIPQSTITKQEAM
TIASINKQPTSIPQSTITKQEAM
BC042224_3 1324 aagtaaaccatacctaaaacgga
ctcctaaaccctcacctcaaact
ctatccaaacctaagcccagatg
//
cmbi.kun.nl), 18-Feb-2005