2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: Q7Z2V9_HUMAN
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence HSM806629_2
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 1007.83 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
Q7Z2V9_HUMAN 1 MNTTDNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR
MNTTDNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR
MNTTDNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR
HSM806629_2 1 aaaagaggatctgatggagagactggtatggtagttacaacaacgttta
taccaagtagtgctggagccgaaagccggaggagttgggtgagatacgg
gtcacctcctgttctgcaaaaactgaccttgcgtccaccttgtctttcg
Q7Z2V9_HUMAN 50 FSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFDG
FSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFDG
FSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFDG
HSM806629_2 148 tacctgggagaaactattctaattaggaaagggcagcgaaaaaaaatgg
tggagttaaaagaaggaggtgagtgcgtaaactaaagagtgcgggctag
ctgatttcgcagtatattaaagttagagaaataatatcaaccaacattc
Q7Z2V9_HUMAN 99 SNIPSINTLAQAEVRSRQISVSSPGSSTDINVKKIASIGDVCESMKQQL
SNIPSINTLAQAEVRSRQISVSSPGSSTDINVKKIASIGDVCESMKQQL
SNIPSINTLAQAEVRSRQISVSSPGSSTDINVKKIASIGDVCESMKQQL
HSM806629_2 295 aaactaaacgcgggctccatgtacgtaagaagaaagaagggtgtaaccc
gatcctactcacatgcgatctcgcgcgcatataatcgtgatgactaaat
ccccctcagaatatgtcgcacactgactcactgatattttctatgaggc
Q7Z2V9_HUMAN 148 LVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILL
LVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILL
LVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILL
HSM806629_2 442 tgtggtgatacgttgtctggcggctagcgggctccggaaataatagatc
ttttagcaatcctgatctaaatcttgcacgaatttgccagcttaaattt
acggagtatttcctaaagttggaggatcaggcagtatagacggtattgt
Q7Z2V9_HUMAN 197 LGNNYVIHRNSCEVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF
LGNNYVIHRNSCEVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF
LGNNYVIHRNSCEVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF
HSM806629_2 589 tgaatgaccaatgggaacggacgcggcgactcgacaggagtgttagagt
tgaaattagaggatatggtcagttaattgctaatataaaaacgtacttt
gacctttcccctatgtctgctttatggtaataacgttctgtttagatat
Q7Z2V9_HUMAN 246 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPT
FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPT
FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPT
HSM806629_2 736 tgcggagcagcgaaaaaatcgcagtggtaagcctgtcgatggtccccca
tacacagtgactataatgtatatgtaaataagaaacgggtgatttttcc
ttataagactaaatgcggcaggctggcccttggtccgggtaggtgcgca
Q7Z2V9_HUMAN 295 LQSITWQMIEQIQFVKLFGMVKIDNLLQEMLLGGASNDGSHLHHPMHPH
LQSITWQMIEQIQFVKLFGMVKIDNLLQEMLLGGASNDGSHLHHPMHPH
LQSITWQMIEQIQFVKLFGMVKIDNLLQEMLLGGASNDGSHLHHPMHPH
HSM806629_2 883 ccaaatcaagcactgactgagaagacccgactgggtaggacccccaccc
tagtcgattaatattattgttataattaatttggccaaggataactaca
ggccggagtgaagttattggtatctatgagaatgtcttcttcttagtat
Q7Z2V9_HUMAN 344 LSQDPLTGQTILLGPMSTLVHADQISTPETPLPSPPQGSGQEQYKIAAN
LSQDPLTGQTILLGPMSTLVHADQISTPETPLPSPPQGSGQEQYKIAAN
LSQDPLTGQTILLGPMSTLVHADQISTPETPLPSPPQGSGQEQYKIAAN
HSM806629_2 1030 ttcgctagcaactgcatacgcggcatacgaccctcccgtgcgctaagga
tcaactcgactttgctccttacaatcccacctccccagcgaaaaatcca
gtacaataatatatcgaagttacgcattacactcaaactgaagcaatac
Q7Z2V9_HUMAN 393 QASVISHQHLSKQKQL
QASVISHQHLSKQKQL
QASVISHQHLSKQKQL
HSM806629_2 1177 cgtgatcccctacact
accttcaaatcaaaat
aaactacgtccaagag
//
cmbi.kun.nl), 18-Feb-2005