2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: Q6QB13_DICLA
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence AY549305_2
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 2049.21 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
Q6QB13_DICLA 1 MDQGGLKRSAFFEMRSDIWGGRSWSRQSIQADTAGSLLQSAMHLPGPGS
MDQGGLKRSAFFEMRSDIWGGRSWSRQSIQADTAGSLLQSAMHLPGPGS
MDQGGLKRSAFFEMRSDIWGGRSWSRQSIQADTAGSLLQSAMHLPGPGS
AY549305_2 1 agcggcacagttgaatgatggaataacaacggaggttcctgacccgcgt
taaggtaggcttatgcatggggggggagtacaccgcttacctatcgcgc
gtgtaggccgtcgggtctgacgcgtggtagtcattggcatagcgtctgt
Q6QB13_DICLA 50 VPQPTVCTNGQGGTKDQGELGGLFESPQHHVMSDMKEGEIIRMQKQQQQ
VPQPTVCTNGQGGTKDQGELGGLFESPQHHVMSDMKEGEIIRMQKQQQQ
VPQPTVCTNGQGGTKDQGELGGLFESPQHHVMSDMKEGEIIRMQKQQQQ
AY549305_2 148 gcccagtaagcggaagcggcggctgtccccgatgaagggaaaacacccc
tcacctgcagaggcaaagatggttaccaaattcataagattgtaaaaaa
gcgctgcataatacacgggtacctgatgttcgacgggtaccaggaaaaa
Q6QB13_DICLA 99 QQQQHQDMDIFNMEDSLPLLKQSISDLNQKSTSVISTSDTSVLGNLPLP
QQQQHQDMDIFNMEDSLPLLKQSISDLNQKSTSVISTSDTSVLGNLPLP
QQQQHQDMDIFNMEDSLPLLKQSISDLNQKSTSVISTSDTSVLGNLPLP
AY549305_2 295 ccccccgagataaggatcttacaatgcacatatgaaatgatgcgacccc
aaaaaaatattataagtcttaagtcataaacccttgccaccttgatctc
aaaacgtgtaccggccggggagttccacggcctccctaccccgccccga
Q6QB13_DICLA 148 DLFPQHIKQEGNFSLDKDMETYSGHIGAGPCDMDGNSGRLIEDTEIWQD
DLFPQHIKQEGNFSLDKDMETYSGHIGAGPCDMDGNSGRLIEDTEIWQD
DLFPQHIKQEGNFSLDKDMETYSGHIGAGPCDMDGNSGRLIEDTEIWQD
AY549305_2 442 gctcccaacggattcgagagatagcagggctgaggaagccaggagatcg
attcaataaagatctaaatacaggatgcgcgatagagggttaacatgaa
ctccaccagggtttgtatgatccacctttgttgtcccttatgttgtgac
Q6QB13_DICLA 197 LDLPSSLPEISDFELDSKVAHLNNILHDSMGGSGPVSGLLKETKVPTWV
LDLPSSLPEISDFELDSKVAHLNNILHDSMGGSGPVSGLLKETKVPTWV
LDLPSSLPEISDFELDSKVAHLNNILHDSMGGSGPVSGLLKETKVPTWV
AY549305_2 589 cgccatccgaagtgtgtaggctaaaccgaaggagcgagtcagaagcatg
tatcgctcatgatatacatcataattaagtggggctggttaacatccgt
tcttctgaactttggtaagacgtccgttcggttttctcgcggaaccaga
Q6QB13_DICLA 246 TGVNCTNGKDGGHGTTPISGIHHPIQHHSHQQKPHHLLQHQHQQHQLQH
TGVNCTNGKDGGHGTTPISGIHHPIQHHSHQQKPHHLLQHQHQQHQLQH
TGVNCTNGKDGGHGTTPISGIHHPIQHHSHQQKPHHLLQHQHQQHQLQH
AY549305_2 736 aggataagagggcgaacatgacccaccctcccacccccccccccccccc
cgtagcagaaggagccctcgtaactaaacaaaacaattaaaaaaaataa
gaactccggcgccgccctactccctgtttcgggccctagcgcgatgtgt
Q6QB13_DICLA 295 QQPGSLLSSVMIKEEKDPDDSFIHISTPGVVKQEKQEGAGFCQAQCLQS
QQPGSLLSSVMIKEEKDPDDSFIHISTPGVVKQEKQEGAGFCQAQCLQS
QQPGSLLSSVMIKEEKDPDDSFIHISTPGVVKQEKQEGAGFCQAQCLQS
AY549305_2 883 cccgtcctagaaaggagcggttacaaacgggacgacggggttcgctcca
aacgcttcgtttaaaaacaacttatgccgttaaaaaagcgtgacagtag
agtgatccctgcgaggtacctcccctgttgcaggggacttccgggtcgc
Q6QB13_DICLA 344 SLHGGGPMSSPMGVGAGPGYHYRANPSPTVGLQDQKPFGMYSNLPLVGE
SLHGGGPMSSPMGVGAGPGYHYRANPSPTVGLQDQKPFGMYSNLPLVGE
SLHGGGPMSSPMGVGAGPGYHYRANPSPTVGLQDQKPFGMYSNLPLVGE
AY549305_2 1030 accgggcattcagggggcgtctagactcaggccgcactgattacccggg
gtagggctccctgtgcgcgaaagcacccctgtaaaactgtacatcttga
tctaaccgcgtgctcaatccccaccgccagcaacggttcgcacgtgtgg
Q6QB13_DICLA 393 SWARGNRYGESSGIQRGDDGLPSAAAVAAFSVSFSSSSPRAGETSSSVV
SWARGNRYGESSGIQRGDDGLPSAAAVAAFSVSFSSSSPRAGETSSSVV
SWARGNRYGESSGIQRGDDGLPSAAAVAAFSVSFSSSSPRAGETSSSVV
AY549305_2 1177 atgagaatggttgacaggggcctggggggttgattattcagggaaatgg
ggcggagagaccgtaggaagtccccctcctctgtcgcccgcgacggctt
cgcggcgtaggcgaggtttggcttacgatttccccctacaaaacctcgg
Q6QB13_DICLA 442 PVQSKPSGQTHKICLVCSDEASGCHYGVVTCGSCKVFFKRAVEGWRARQ
PVQSKPSGQTHKICLVCSDEASGCHYGVVTCGSCKVFFKRAVEGWRARQ
PVQSKPSGQTHKICLVCSDEASGCHYGVVTCGSCKVFFKRAVEGWRARQ
AY549305_2 1324 cgctacagcacaattgttgggtgtctgggatgatagttaaggggtagcc
ctacacggacaatgttgcaaccggaagttcggggatttagctagggcga
acgcgctgggtgctggtacgcaacccgcatccccggccggacaagaaaa
Q6QB13_DICLA 491 NTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGMNLEARKNKKL
NTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGMNLEARKNKKL
NTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGMNLEARKNKKL
AY549305_2 1471 aaggccatctggaagtaagaacaaatcgtctaatccggaatggaaaaac
acagaaaatgcggaagttaatggaagccggtgagtacgtatacgaaaat
catcgcccgtagatcccttgcgggctgccccgattacagcgaggacggg
Q6QB13_DICLA 540 IKMKVQRPSGSSEPISNMPVPVIPRCMPQLVPTMLSVLKAIEPEIIYSG
IKMKVQRPSGSSEPISNMPVPVIPRCMPQLVPTMLSVLKAIEPEIIYSG
IKMKVQRPSGSSEPISNMPVPVIPRCMPQLVPTMLSVLKAIEPEIIYSG
AY549305_2 1618 aaaagccctgttgcaaaacgcgacatacccgcaactgcagagcgaattg
tatatagccgccactgatctcttcggtcattccttcttactacattacg
cggagggctaaggccccgttacctgcgcacgccggtgtgaagagccctc
Q6QB13_DICLA 589 YDSTLPDTSSWLMTTLNRLGGQQVISAVKWAKSLPGFRNLHLDDQMTLL
YDSTLPDTSSWLMTTLNRLGGQQVISAVKWAKSLPGFRNLHLDDQMTLL
YDSTLPDTSSWLMTTLNRLGGQQVISAVKWAKSLPGFRNLHLDDQMTLL
AY549305_2 1765 tgaaccgatttcaaacaacggccgatggatgatccgtcacccggcaatc
aagctcacccgttcctagtggaattcctagcactcgtgatataaatctt
tccagtcacggcgcttcgggaggcctacggcgagaccccgcctcggagg
Q6QB13_DICLA 638 QCSWLFLMSFSLGWRSYEQCNGSMLCFAPDLVINKERMKLPFMTDQCEQ
QCSWLFLMSFSLGWRSYEQCNGSMLCFAPDLVINKERMKLPFMTDQCEQ
QCSWLFLMSFSLGWRSYEQCNGSMLCFAPDLVINKERMKLPFMTDQCEQ
AY549305_2 1912 ctttctcattacgtattgctagaacttgcgcgaaagcaatctaagctgc
agcgttttctgtgggcaaagaggttgtccatttaaagtatcttcaagaa
gccgcccgcctttgggcggtctcgcctctttcccaatgggccgccgcgg
Q6QB13_DICLA 687 MLKICNEFVRLQVSYDEYLCMKVLLLLSTVPKDGLKSQAVFDEIRMTYI
MLKICNEFVRLQVSYDEYLCMKVLLLLSTVPKDGLKSQAVFDEIRMTYI
MLKICNEFVRLQVSYDEYLCMKVLLLLSTVPKDGLKSQAVFDEIRMTYI
AY549305_2 2059 acaatagtgcccgttggtctaagctccaagcaggcaacggtggaaaata
ttatgaattgtatcaaaatgtatttttgctcaagtagacttaatgtcat
gggcttgtcagggctcgcgcggctagctaagatcggcgggtcgcggact
Q6QB13_DICLA 736 KELGKAIVKREENASQNWQRFYQLTKLLDSMQEMVESLLQICFYTFVNK
KELGKAIVKREENASQNWQRFYQLTKLLDSMQEMVESLLQICFYTFVNK
KELGKAIVKREENASQNWQRFYQLTKLLDSMQEMVESLLQICFYTFVNK
AY549305_2 2206 agcgagagaaggagacatccttccaaccgtacgaggacccatttatgaa
aatgacttagaaacgaagagtaatcattactaattagttatgtacttaa
gggaacccgaggcatgcggcccgatgagccggggcgttcgctccctgta
Q6QB13_DICLA 785 TLSVEFPEMLAEIITNQIPKFKDGSVKPLLFHQK
TLSVEFPEMLAEIITNQIPKFKDGSVKPLLFHQK
TLSVEFPEMLAEIITNQIPKFKDGSVKPLLFHQK
AY549305_2 2353 acaggtcgacggaaaacacataggagaccctcca
ctgtatcattcattcaatcataaggtactttaaa
cctgacagggggccctgaaacacgccgtggttga
//
cmbi.kun.nl), 18-Feb-2005