2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: Q20379_CAEEL
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence CEF44A2_7
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 949.78 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
Q20379_CAEEL 1 MYFLEGLVAQDKKCTICSRPASTRNHGVLSCSACKMFFARTVQNKLKYE
MYFLEGLVAQDKKCTICSRPASTRNHGVLSCSACKMFFARTVQNKLKYE
MYFLEGLVAQDKKCTICSRPASTRNHGVLSCSACKMFFARTVQNKLKYE
CEF44A2_7 1 attcggcggcgaataattccgtacacggcttagtaattgaagcaacatg
tattagttcaaaagctgcgccccgaagttcggcgatttcgctaaataaa
gttaacagtatggtaatcaaacttttttagctatagtccattgtaaacg
Q20379_CAEEL 50 CKKENQCLGNFSHRICQSCRFEKCLKLGMRCSTTNDFIINIEHSSDKKF
CKKENQCLGNFSHRICQSCRFEKCLKLGMRCSTTNDFIINIEHSSDKKF
CKKENQCLGNFSHRICQSCRFEKCLKLGMRCSTTNDFIINIEHSSDKKF
CEF44A2_7 148 taagacttgattccatcttctgattatgacttaaagtaaaagcttgaat
gaaaaagtgatcagtgacggtaagtatgtggcccaatttataaccaaat
caaatatgactttactgatctaatgaaagatttgttttctagtggtaat
Q20379_CAEEL 99 SRLLQDLVSRDSRTYSKAINFYTLDDPSLSDIIENKKAMKLIKRTPEVQ
SRLLQDLVSRDSRTYSKAINFYTLDDPSLSDIIENKKAMKLIKRTPEVQ
SRLLQDLVSRDSRTYSKAINFYTLDDPSLSDIIENKKAMKLIKRTPEVQ
CEF44A2_7 295 actccgtgtagacattagaattatggcatagaagaaagaataaaacggc
ggttaattcgaggcacactatactaacgtgattaaaactattagccata
tagtataacgttagcagtctttcgttttgttttataaaggacagaaata
Q20379_CAEEL 148 STPEEWSFYCAHSKILFFLGFDFINEMSTSDKKILFENNILRTGSLSGA
STPEEWSFYCAHSKILFFLGFDFINEMSTSDKKILFENNILRTGSLSGA
STPEEWSFYCAHSKILFFLGFDFINEMSTSDKKILFENNILRTGSLSGA
CEF44A2_7 442 tacggtttttgctaactttgtgtaagataagaaactgaaataagtctgg
cccaagctagcacatttttgtattaatccgaaatttaaattgcgctcgc
gtaaagatttacgaaatcgtttcttagcttcggaacatttgataacctc
Q20379_CAEEL 197 MHAYKANKEIMMTPSGEDYVSEKIHQLFVKSPNIITQISSLVVSKFIEL
MHAYKANKEIMMTPSGEDYVSEKIHQLFVKSPNIITQISSLVVSKFIEL
MHAYKANKEIMMTPSGEDYVSEKIHQLFVKSPNIITQISSLVVSKFIEL
CEF44A2_7 589 acgtagaagaaaactgggtgtgaaccctgatcaaaacattcggtatagt
tacaacaaatttcccgaaatcaataatttaccattcatcctttcattat
gtttaatagaggaacagctaaggttgtcggttttttgacataatgcaga
Q20379_CAEEL 246 KVTNEEYVLLVMLFFCNPAISHKLSDKAKESLAKYQKMYCSALFNYCQI
KVTNEEYVLLVMLFFCNPAISHKLSDKAKESLAKYQKMYCSALFNYCQI
KVTNEEYVLLVMLFFCNPAISHKLSDKAKESLAKYQKMYCSALFNYCQI
CEF44A2_7 736 agaaggtgccgattttacgatcattgagagtcgatcaatttgttattca
atcaaaattttttttgacctcaatcaacaactcaaaatagccttaagat
gtataatagctggttttaatacgggtatggtaaataggtttagctttaa
Q20379_CAEEL 295 KYKKAAPARLEDLLSLYSVANQANQCFHSLTIFVHLNNQNCQFKKLIAD
KYKKAAPARLEDLLSLYSVANQANQCFHSLTIFVHLNNQNCQFKKLIAD
KYKKAAPARLEDLLSLYSVANQANQCFHSLTIFVHLNNQNCQFKKLIAD
CEF44A2_7 883 ataaggcgatggcttttaggacgacttcataatgccaacatctaatagg
aaaaccccgtaattctagtcaacaagtagtctttataaaagataattca
acaaatacaaattaaactcctattacttcgctttttttattatgggatc
Q20379_CAEEL 344 TWMSTLKNMNDSSLATRGLPFAAPAIHDLTSGRHTRAPNPM
TWMSTLKNMNDSSLATRGLPFAAPAIHDLTSGRHTRAPNPM
TWMSTLKNMNDSSLATRGLPFAAPAIHDLTSGRHTRAPNPM
CEF44A2_7 1030 ataaacaaaagttcgacgtctggcgacgcatgccaagcaca
cgtgctaataacctccggtctcccctaatccggacgccact
gggtcgacgcttaatcacggctacaactcagattaacgtcg
//
cmbi.kun.nl), 18-Feb-2005