2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: O45521_CAEEL
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence CEF44G3_10
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 768.07 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
O45521_CAEEL 1 MSSQNAKSIGGILETSTVPLVIQPQIVNDPAQNNITLPITLCAVCGDTS
MSSQNAKSIGGILETSTVPLVIQPQIVNDPAQNNITLPITLCAVCGDTS
MSSQNAKSIGGILETSTVPLVIQPQIVNDPAQNNITLPITLCAVCGDTS
CEF44G3_10 1 aaacagataggatgatagccgacccagagcgcaaaaccaactggtggat
tggaacactggttaccctctttacattaaccaaatctctctgctggacc
gccatggactctgataagtgccaggtatccgaccattacgttattgctt
O45521_CAEEL 50 NGNHYGVPTCFGCSGFFRRTVRNKLVHGCWNGDGNCVIDKANRNRCKSC
NGNHYGVPTCFGCSGFFRRTVRNKLVHGCWNGDGNCVIDKANRNRCKSC
NGNHYGVPTCFGCSGFFRRTVRNKLVHGCWNGDGNCVIDKANRNRCKSC
CEF44G3_10 148 agactggcattgtagttaaagaaatgcgttagggatgagagacaatatt
agaaagtccgtggggttggctgaattagggagagagttaacagaggacg
cattctgactcactgccaactacggatatgtacactgttagcgcgcgct
O45521_CAEEL 99 RIKKCFKKGMNKNAVQPERTSHSYTVEYVELPSFREYSKGLLPTHSDRL
RIKKCFKKGMNKNAVQPERTSHSYTVEYVELPSFREYSKGLLPTHSDRL
RIKKCFKKGMNKNAVQPERTSHSYTVEYVELPSFREYSKGLLPTHSDRL
CEF44G3_10 295 caaattaagaaaaggccgaatcataggtggtcttcgttagcccactgcc
gtaagtaagtaaactacagccagactaatatcctgaacagttccacagt
atagccggggtgttgacgatctcctagtcggcacagtcgatgttctttc
O45521_CAEEL 148 RFQHEHAQHEIDTSSVLVHLKNALQWVQQFSLFAVLSDVEKSQIILTQW
RFQHEHAQHEIDTSSVLVHLKNALQWVQQFSLFAVLSDVEKSQIILTQW
RFQHEHAQHEIDTSSVLVHLKNALQWVQQFSLFAVLSDVEKSQIILTQW
CEF44G3_10 442 atccgcgccgagaatgcgccaagcctgccttctggctgggaacaacact
gtaaaacaaatacgctttataactagtaatcttcttcataagatttcag
acacattatatcaccgattgacacgggagtgccagtcttagcgcagcgg
O45521_CAEEL 197 PHLLCLALFENSEKIFIDEKFAQLAEKFKSLELSAQDYFLLKGIIIFTE
PHLLCLALFENSEKIFIDEKFAQLAEKFKSLELSAQDYFLLKGIIIFTE
PHLLCLALFENSEKIFIDEKFAQLAEKFKSLELSAQDYFLLKGIIIFTE
CEF44G3_10 589 cccttcgttgatgaataggatgccggatatcgctgcgttctagaaatag
cattgtcttaacaatttaaatcatcaatactatccaaatttagttttca
attgccggcaccaaccctaataagtgacaccatgggttccggatttcga
O45521_CAEEL 246 TKDGTDLKFDRQLDICIGLLNQLHLESSKSKSGRLLFLLGELKSYSTRQ
TKDGTDLKFDRQLDICIGLLNQLHLESSKSKSGRLLFLLGELKSYSTRQ
TKDGTDLKFDRQLDICIGLLNQLHLESSKSKSGRLLFLLGELKSYSTRQ
CEF44G3_10 736 aaggagcatgcccgatagccactccgttatatgacctccggcatttaac
caagcatatagatatgtgttaatataccacacggtttttgatacaccga
catcttcactcattctcctctggcggtagcatagtatcccgtactttag
O45521_CAEEL 295 LESLLDLKACEIVISFL
LESLLDLKACEIVISFL
LESLLDLKACEIVISFL
CEF44G3_10 883 cgtccgcagtgagaatc
tacttatacgatttgtt
tatcgttattgtgtttt
//
cmbi.kun.nl), 18-Feb-2005