2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: O17934_CAEEL
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence CEK06B4_10
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 994.37 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
O17934_CAEEL 1 MFTLARVLNNIGSASSNEPIPYCLICSEVADGNHFGVAAACRACAAFFR
MFTLARVLNNIGSASSNEPIPYCLICSEVADGNHFGVAAACRACAAFFR
MFTLARVLNNIGSASSNEPIPYCLICSEVADGNHFGVAAACRACAAFFR
CEK06B4_10 1 atacgcgtaaagagttagcactttatagggggactgggggtagtggttc
ttctcgttaatggcccaactcagttggatcagaatgtcccggcgccttg
gccattggcttactactagtattgtttgtttgtttaatagtatctatcc
O17934_CAEEL 50 RTVQHNKIHECGRNGQCFFLSCKFLLVGFQISPLSSDARSMCKACRYGK
RTVQHNKIHECGRNGQCFFLSCKFLLVGFQISPLSSDARSMCKACRYGK
RTVQHNKIHECGRNGQCFFLSCKFLLVGFQISPLSSDARSMCKACRYGK
CEK06B4_10 148 cagccaaacgtgaagctttcttatttggtcatccatggcaatagtatga
gctaaaataagggagagtttcgattttgtatcctgcacggtgacggaga
cacactgccgtgatgactcaacgtagcgtaaaaatacagcgtaccgctg
O17934_CAEEL 99 CLEMGMQRSSVQQRREQLGKRLNISDDRGKPVLNKLRRAYEMLILNRKH
CLEMGMQRSSVQQRREQLGKRLNISDDRGKPVLNKLRRAYEMLILNRKH
CLEMGMQRSSVQQRREQLGKRLNISDDRGKPVLNKLRRAYEMLILNRKH
CEK06B4_10 295 tcgagaccttgccacgccgaccaatggcgacgcaatcagtgatataaac
gtatgtagcctaaggaatgagtatcaaggacttaatggcaattttagaa
ctagagaaaggagataacgatgtcttttagagttggaagcagatacgac
O17934_CAEEL 148 VHNRRENQAPRAIGFNELPIVFQNESTSIYQFLWEAFPEYSMLLPDTKL
VHNRRENQAPRAIGFNELPIVFQNESTSIYQFLWEAFPEYSMLLPDTKL
VHNRRENQAPRAIGFNELPIVFQNESTSIYQFLWEAFPEYSMLLPDTKL
CEK06B4_10 442 gcaacgacgccgagtagccagtcagtaaatctctggtcgttacccgaac
taaggaaaccgctgtaatctttaaaccgtaattgactcaactttcacat
gttgggcaacaccctcgtacgtacggacatgccgaatcgccgttacaac
O17934_CAEEL 197 AFFKNFFLSFCLFESSFNGCSAKQKNVMLIPSGDYIDLAHSESFFTNDH
AFFKNFFLSFCLFESSFNGCSAKQKNVMLIPSGDYIDLAHSESFFTNDH
AFFKNFFLSFCLFESSFNGCSAKQKNVMLIPSGDYIDLAHSESFFTNDH
CEK06B4_10 589 gttaattttttctgattagttgacaagacactggtagtgctgtttaagc
cttaatttctgttagctaggccaaaattttccgaatatcacacttcaaa
atcatccggctatgcgttataagaatggctactccctgtttagtccctt
O17934_CAEEL 246 QTFTERDNIEILAQRLKLIQSSITVPLSAENVDIYEFLALAGIILLESD
QTFTERDNIEILAQRLKLIQSSITVPLSAENVDIYEFLALAGIILLESD
QTFTERDNIEILAQRLKLIQSSITVPLSAENVDIYEFLALAGIILLESD
CEK06B4_10 736 catagagaagacgcacatacttaagctaggaggatgtcgcggaactgtg
actcagaatattcagtattacctctctgcaatataattctcgttttaca
atctaacttaactagaaaaaatattggttatatctgccgtgtctcgagt
O17934_CAEEL 295 SESEADFQEEAVKIKSNIIKDLLFHYQCINIYDDAAMRLGAVLSILPSI
SESEADFQEEAVKIKSNIIKDLLFHYQCINIYDDAAMRLGAVLSILPSI
SESEADFQEEAVKIKSNIIKDLLFHYQCINIYDDAAMRLGAVLSILPSI
CEK06B4_10 883 tgtgggtcggggaaaaaaaagcctctctaaatggggaacgggttaccta
cacacataaactatagattaatttaaagtataaacctgtgcttcttcct
tgaacttaaatggtgctccgtattctatattttcaaggtcatgcataat
O17934_CAEEL 344 QVCCSRSNNFLIINSKDVSESQSPFSRIHGNQKYAQFVRSSQESLRHVL
QVCCSRSNNFLIINSKDVSESQSPFSRIHGNQKYAQFVRSSQESLRHVL
QVCCSRSNNFLIINSKDVSESQSPFSRIHGNQKYAQFVRSSQESLRHVL
CEK06B4_10 1030 cgtttcaaattaaataggtgactcttcacgacatgctgcttcgttccgc
atggcggaattttacaatcagacctcgtagaaaacattgccaactgatt
attcggccttgtactattagcgagtaaatataattatactcaataattc
O17934_CAEEL 393 ANFIKFICKFVSI
ANFIKFICKFVSI
ANFIKFICKFVSI
CEK06B4_10 1177 gataatatatgta
cattattgattct
cccaatttatttt
//
cmbi.kun.nl), 18-Feb-2005