2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: E75_METEN
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence AF092946_2
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 1510.93 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
E75_METEN 1 MFCDQDMYEIPADCQVLVDKTVIEFDGTTVLCRVCGDKASGFHYGVHSC
MFCDQDMYEIPADCQVLVDKTVIEFDGTTVLCRVCGDKASGFHYGVHSC
MFCDQDMYEIPADCQVLVDKTVIEFDGTTVLCRVCGDKASGFHYGVHSC
AF092946_2 1 attgcgatgacggtcgtggaagagtggaagctcgtggagtgtctggctt
ttgaaataatccagatttaacttatagccttggtggaaccgtaagtacg
gtctgtgtgctgctacggcgtgcgccggtgtcggtacgcatcctcaccc
E75_METEN 50 EGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGM
EGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGM
EGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGM
AF092946_2 148 ggtagttccaaccaactcctaaaccttaccaaaactcttacaataggga
aggagttgggtaaataagcgcaaaagcttgtagaggaaggtaagtctgt
aacgaccttccaggcgtctccgcggcccctccgcacgccgcggcctgcg
E75_METEN 99 SRDAVRFGRVPKREKAKILAAMQSVNAKSQERAVLAELEDDTRVTAAII
SRDAVRFGRVPKREKAKILAAMQSVNAKSQERAVLAELEDDTRVTAAII
SRDAVRFGRVPKREKAKILAAMQSVNAKSQERAVLAELEDDTRVTAAII
AF092946_2 295 tcgggctgcgcacgagaacggacagagatcgaggcggcgggacgaggaa
cgactgtggtcagaacattcctagtacacaagcttcataaacgtccctt
gattgccgtgtgcagcgcggcggccctgcgggctcagggtctccctccc
E75_METEN 148 RAHMDTCDFTRDKVAPMLQQARTHPSYTQCPPYLACPLNPRPVPLHGQQ
RAHMDTCDFTRDKVAPMLQQARTHPSYTQCPPYLACPLNPRPVPLHGQQ
RAHMDTCDFTRDKVAPMLQQARTHPSYTQCPPYLACPLNPRPVPLHGQQ
AF092946_2 442 cgcagatgtaagaggcacccgcaccatactcctcgtccacccgcccgcc
gcatacgatcgaatccttaacgcacgacagccatcgctacgctctagaa
tacgtctccagcggaggcgaccacctcagcgatggcggctgagtcccga
E75_METEN 197 ELVQDFSEALLPAIRGVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLLV
ELVQDFSEALLPAIRGVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLLV
ELVQDFSEALLPAIRGVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLLV
AF092946_2 589 gcgcgtaggcccgacggggtgacccgtcccccggcgaccagggtggccg
attaatgacttcctggttatcagtcgtaatcaaaatcttacgttatttt
acaacccagtcccctcccgtagctaccgggaagcggtgggacgcagcct
E75_METEN 246 RLAGMFDARTNAMLCLNGQLVRREALHTSVNARFLMDSMFDFAERVNSL
RLAGMFDARTNAMLCLNGQLVRREALHTSVNARFLMDSMFDFAERVNSL
RLAGMFDARTNAMLCLNGQLVRREALHTSVNARFLMDSMFDFAERVNSL
AF092946_2 736 ccggatggcaagactcagccgccggccatgagctcagtatgtggcgaac
gtcgttacgcacttgtagattggactacctacgtttacttatcagtagt
tcaggcccccccgccccagcccagcccaacctcccgccgtttcgccccc
E75_METEN 295 ALNDAELALFCAVVVLAPDRPGLRNAELVERVHRRLVNCLQAVVSKHHP
ALNDAELALFCAVVVLAPDRPGLRNAELVERVHRRLVNCLQAVVSKHHP
ALNDAELALFCAVVVLAPDRPGLRNAELVERVHRRLVNCLQAVVSKHHP
AF092946_2 883 gcagggtgcttggggtgcgccgccaggcggcgcaccgatccgggtaccc
ctaacatcttgcttttccagcgtgacattagtaggttagtacttcaaac
cgtttggacctcgtggaaccaaacccggggtgcgtggtccggggcaccc
E75_METEN 344 ENPNLQRDLLSKIPDLRTLNTLHSEKLLKYKMTEHTAAGAPWDDSRSSW
ENPNLQRDLLSKIPDLRTLNTLHSEKLLKYKMTEHTAAGAPWDDSRSSW
ENPNLQRDLLSKIPDLRTLNTLHSEKLLKYKMTEHTAAGAPWDDSRSSW
AF092946_2 1030 gacacccgcctaacgccacaacctgatcataaagcaggggctggtcttt
aacatagattcatcatgctactacaattaaatcaacccgccgaacgccg
acccggtctccgcccggtccggcagggcacggagccgccccgcctccgg
E75_METEN 393 SMEQESSVGSPSSSYTTDEAMRSPVSCSESICSGESASSGESLCGSEVS
SMEQESSVGSPSSSYTTDEAMRSPVSCSESICSGESASSGESLCGSEVS
SMEQESSVGSPSSSYTTDEAMRSPVSCSESICSGESASSGESLCGSEVS
AF092946_2 1177 aagcgaaggtcttttaagggactcgtttgtattggtgatggtctgaggt
gtaaaggtgcccccaccaactgcctcgcactgcgaccgcgactgggatc
cgggaccgcccttcccccgcgtcaggccgcccctagccccgggcacagc
E75_METEN 442 GYTELRPPFPLARRRHDHSEGASSGDEATESPLKCPFSKRKSDSPDDSG
GYTELRPPFPLARRRHDHSEGASSGDEATESPLKCPFSKRKSDSPDDSG
GYTELRPPFPLARRRHDHSEGASSGDEATESPLKCPFSKRKSDSPDDSG
AF092946_2 1324 gtagcccctccgccccgctgggttggggagtccatctaaaatgacggtg
gacatgcctctcgggaaacagcccgaaccacctagctgagacagcaacg
actgccgactcccgtccccactgtccggcattggcaccgaagccgccta
E75_METEN 491 IESGTDRSDKLSSPSVCSSPRSSIDEKERGGPARTICRCCARLQRRPSS
IESGTDRSDKLSSPSVCSSPRSSIDEKERGGPARTICRCCARLQRRPSS
IESGTDRSDKLSSPSVCSSPRSSIDEKERGGPARTICRCCARLQRRPSS
AF092946_2 1471 agagagaagacttctgtttccttaggagcggcgaaatcttgcccccctt
taggcaggaatcccctgcccgcctaaaagggccgctggggcgtaggccc
cgccacgccgggcgtcttcaaactcgagaaaggggacgccgcagccaaa
E75_METEN 540 TRICSWRKPTTSPIKSSVRNVGKRSLTPHSPPPPRSWSRRCLSLHSTRA
TRICSWRKPTTSPIKSSVRNVGKRSLTPHSPPPPRSWSRRCLSLHSTRA
TRICSWRKPTTSPIKSSVRNVGKRSLTPHSPPPPRSWSRRCLSLHSTRA
AF092946_2 1618 acatttaacaaacaaatgcaggaaacaccacccccttaactcaccaaag
cgtgcggacccgctagctgatgaggtccagccccgcgggggtgtagcgc
agccagggtaaccaatcccccgggccttccatttccgcactccccccat
E75_METEN 589 LWLRHTPPWPPVWRRPLA
LWLRHTPPWPPVWRRPLA
LWLRHTPPWPPVWRRPLA
AF092946_2 1765 ctcccacctccgtccccg
tgtgacccgcctgggctc
cggtcaatgtacgttcat
//
cmbi.kun.nl), 18-Feb-2005