2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: E75_MANSE
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence S60738_3
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 1550.00 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
Warning: protein length=699 (x3=2097) and cDNA length=2058
E75_MANSE 66 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRD
+GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRD
QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRD
S60738_3 154 cgttcctaccaactactaaaccttacaaaaactcttccaatagggaaag
agttggctaaataagcgcaaaagcttgtagaggaaggtaagtctgtgga
gcctgccaaggcgcaccgacggccctaccatgcatcagaacatgcgcat
E75_MANSE 115 AVRFGRVPKREKARILAAMQQSSTSRAHEQAAAAELDDAPRLLARVVRA
AVRFGRVPKREKARILAAMQQSSTSRAHEQAAAAELDDAPRLLARVVRA
AVRFGRVPKREKARILAAMQQSSTSRAHEQAAAAELDDAPRLLARVVRA
S60738_3 301 ggctgcgcacgagcatggaccttatcgcgcgggggtgggcaccgcggcg
ctgtggtcagaacgttcctaaccccgcaaaccccataaccgttcgttgc
ggatgagcgcgggctaccggaggtgcctgacctgggtctgggaggggcc
E75_MANSE 164 HLDTCEFTRDRVAAMRARARDCPTYSQPTLACPLNPAPELQSEKEFSQR
HLDTCEFTRDRVAAMRARARDCPTYSQPTLACPLNPAPELQSEKEFSQR
HLDTCEFTRDRVAAMRARARDCPTYSQPTLACPLNPAPELQSEKEFSQR
S60738_3 448 ccgatgtacgcgggacgcgcgtcattccacgtctacgcgcctgagttcc
atacgatcgagtcctgcgcgagccacacctcgctacccatacaaatcag
tccccgcgcccttcgtgtccctccttattgtccgcgaaaaatagattga
E75_MANSE 213 FAHVIRGVIDFAGLIPGFQLLTQDDKFTLLKSGLFDALFVRLICMFDAP
FAHVIRGVIDFAGLIPGFQLLTQDDKFTLLKSGLFDALFVRLICMFDAP
FAHVIRGVIDFAGLIPGFQLLTQDDKFTLLKSGLFDALFVRLICMFDAP
S60738_3 595 tgcgacggagtggcacgtcccacggataccaagctggctgccatatggc
tcattggttatcgttcgtattcaaaatcttaggttactttgttgttacc
tgcaattgtcccccccgcacgagtcacggagtcctctattcaacgttgg
E75_MANSE 262 LNSIICLNGQLMKRDSIQSGANARFLVDSTFKFAERMNSMNLTDAEIGL
LNSIICLNGQLMKRDSIQSGANARFLVDSTFKFAERMNSMNLTDAEIGL
LNSIICLNGQLMKRDSIQSGANARFLVDSTFKFAERMNSMNLTDAEIGL
S60738_3 742 caaaattagccaaagtacaggagatcggtatatggcaataatagggagc
tagttgtagattagactaggcacgtttacctatcagtactatcacatgt
cttactgccacggatctactctgaccctttcatagcgctgtgattattg
E75_MANSE 311 FCAIVLITPDRPGLRNVELVERMHTRLKACLQTVIAQNRPDRPGFLREL
FCAIVLITPDRPGLRNVELVERMHTRLKACLQTVIAQNRPDRPGFLREL
FCAIVLITPDRPGLRNVELVERMHTRLKACLQTVIAQNRPDRPGFLREL
S60738_3 889 ttgagcaacgacgccaggcggaacaccagtccagagcaacgccgtcagc
tgcttttccagcgtgatattagtacgtacgtacttcaagcagcgttgat
tcaagccgacacttcttgtaaagcgacagcggggcagtgacagacggag
E75_MANSE 360 MDTLPDLRTLSTLHTEKLVVFRTEHKELLRQQMWSEEEAVSWVDSGADE
MDTLPDLRTLSTLHTEKLVVFRTEHKELLRQQMWSEEEAVSWVDSGADE
MDTLPDLRTLSTLHTEKLVVFRTEHKELLRQQMWSEEEAVSWVDSGADE
S60738_3 1036 agaccgtcacaaccagacggtcagcagttcccatagggggttggtgggg
tactcatgctgctacaattttgcaaaattgaatggaaactcgtacgcaa
gcttccacttcaccgaatcaccgataagaaaaggcggattagttaattg
E75_MANSE 409 LARSPIGSVSSSESGEAVGDCGTPLLAATLAGRRRLDSRGSVDEEALGV
LARSPIGSVSSSESGEAVGDCGTPLLAATLAGRRRLDSRGSVDEEALGV
LARSPIGSVSSSESGEAVGDCGTPLLAATLAGRRRLDSRGSVDEEALGV
S60738_3 1183 tgcacagtgtaagtggggggtgacccggacggccccgtcgtgggggcgg
tcggctgctcggacgactgaggccttccctcggggtacggctaaactgt
aacccccgggctactggaatccaaagcctgcccgccctcccctgatccc
E75_MANSE 458 AHLAHNGLTVTPVRQPPRYRKLDSPTDSGIESGNEKHERIVGTGSGCSS
AHLAHNGLTVTPVRQPPRYRKLDSPTDSGIESGNEKHERIVGTGSGCSS
AHLAHNGLTVTPVRQPPRYRKLDSPTDSGIESGNEKHERIVGTGSGCSS
S60738_3 1330 gccgcagcagacgccccctaacgtcagtgagtgagacgaaggagtgtta
catcaagtctcctgaccgagatacccacgtacgaaaaagttgcgcggcg
atcacttcgggattgacgcggtcttttattgcatagtagacctggtcgc
E75_MANSE 507 PRSSLEEHNEDRRPPVSADDMPVLKRVLQAPPLYGGTPSLMDEAYRRHK
PRSSLEEHNEDRRPPVSADDMPVLKRVLQAPPLYGGTPSLMDEAYRRHK
PRSSLEEHNEDRRPPVSADDMPVLKRVLQAPPLYGGTPSLMDEAYRRHK
S60738_3 1477 cattcggcaggacccgtgggacgcacgccgccctggacttagggtacca
cgcctaaaaaaggcctccaatcttagttaccctaggcccttaacaggaa
aatgaaaccacagaccctccggacggagacgagcacttgggtatcagcg
E75_MANSE 556 KFRALRRDTGEAEARTVRPTPSPQPQHPHPANPAHPAHSPRPQRASLSS
KFRALRRDTGEAEARTVRPTPSPQPQHPHPANPAHPAHSPRPQRASLSS
KFRALRRDTGEAEARTVRPTPSPQPQHPHPANPAHPAHSPRPQRASLSS
S60738_3 1624 atcgtccgagggggcagccactccccccccgacgccgctcccccgtctt
atgctggacgacacgctgcccccacaacaccaccaccaccgcagcctcc
accagatctggaggcatgagaggagatgcaccggctccgagggcgtcgc
E75_MANSE 605 THSVLAKSLMEGPRMTPEQLKRTDIIQQYMRRGESSAPAEGCPLRAGGL
THSVLAKSLMEGPRMTPEQLKRTDIIQQYMRRGESSAPAEGCPLRAGGL
THSVLAKSLMEGPRMTPEQLKRTDIIQQYMRRGESSAPAEGCPLRAGGL
S60738_3 1771 actgcgaataggccaacgccacagaacctaccggtagcgggtcccgggc
cacttcagttagcgtccaatagcattaaatgggacgcccaggctgcggt
gttgccacaggcgtgcagggacgcccggcggccggcggggccggcgtag
E75_MANSE 654 LTCYRGASPAPQPVLALQVDVTDAPLNLSKKSPSPPRTYMPQMLEA
LTCYRGASPAPQPVLALQVDVTDAPLNLSKKSPSPPRTYMPQMLEA
LTCYRGASPAPQPVLALQVDVTDAPLNLSKKSPSPPRTYMPQMLEA
S60738_3 1918 cattcggtcgcccgcgccgggaggccactaatctcccataccatgg
tcgaggcccccacttctatatcacctatcaacccccgcatcattac
cgccccgcggggccgcgagccccgggcccagccgggctcggggaag
//
cmbi.kun.nl), 18-Feb-2005