2005, NucleaRDB.
The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: E75A_DROME
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence DME75A_3
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 2995.44 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
E75A_DROME 1 MLMSADSSDSAKTSVICSTVSASMLAPPAPEQPSTTAPPILGVTGRSHL
MLMSADSSDSAKTSVICSTVSASMLAPPAPEQPSTTAPPILGVTGRSHL
MLMSADSSDSAKTSVICSTVSASMLAPPAPEQPSTTAPPILGVTGRSHL
DME75A_3 1 atatggatgagaatgataagagaacgccgcgccaaagccatggagctcc
tttccagcagcaccttggctgcgttcccccaacgcccccttgtcggcat
gagcgctatccgttgcccggtccgaaaataagcccaaactggaatatcg
E75A_DROME 50 ENALKLPPNTSVSAYYQHNSKLGMGQNYNPEFRSLVAPVTDLDTVPPTG
ENALKLPPNTSVSAYYQHNSKLGMGQNYNPEFRSLVAPVTDLDTVPPTG
ENALKLPPNTSVSAYYQHNSKLGMGQNYNPEFRSLVAPVTDLDTVPPTG
DME75A_3 148 gagcacccaaagtgttccaaacgagcatacgtaacggcgagcgagccag
aactatccacgtccaaaaagatgtgaaaacatggttcctcatactcccg
atcgaagacattgtccgcccggcgcgtctgacgcgaatcatgttgacat
E75A_DROME 99 VTMASSSNSPNSSVKLPHSGVIFVSKSSAVSTTDGPTAVLQQQQPQQQM
VTMASSSNSPNSSVKLPHSGVIFVSKSSAVSTTDGPTAVLQQQQPQQQM
VTMASSSNSPNSSVKLPHSGVIFVSKSSAVSTTDGPTAVLQQQQPQQQM
DME75A_3 295 gaagattatcattgacccaggatgaataggaaaggcaggtcccccccca
tctcgccaccacctatcaggttttgacgctgccagcccttaaaacaaat
gcggttgttcccccggccccgctccagtcccccttctaggaggggggag
E75A_DROME 148 PQHFESLPHHHPQQEHQPQQQQQQHHLQHHPHPHVMYPHGYQQANLHHS
PQHFESLPHHHPQQEHQPQQQQQQHHLQHHPHPHVMYPHGYQQANLHHS
PQHFESLPHHHPQQEHQPQQQQQQHHLQHHPHPHVMYPHGYQQANLHHS
DME75A_3 442 ccctgtccccccccgcccccccccccccccccccgatccgtccgaccct
caatactcaaacaaaaacaaaaaaaataaacacattacagaaacataac
cgccgcgcccccggacgaggggaatctgccatatggtgcatggctgccg
E75A_DROME 197 GGIAVVPADSRPQTPEYIKSYPVMDTTVASSVKGEPELNIEFDGTTVLC
GGIAVVPADSRPQTPEYIKSYPVMDTTVASSVKGEPELNIEFDGTTVLC
GGIAVVPADSRPQTPEYIKSYPVMDTTVASSVKGEPELNIEFDGTTVLC
DME75A_3 589 ggagggcggtcccacgtaattcgagaaggatgaggcgcaagtggaagct
ggtcttccacgcaccaatacacttacctcgctagacatatatagccttg
ttttgtggtgtcgtcgccgccatgtatgttgaggaaaccaactccaggc
E75A_DROME 246 RVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRIN
RVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRIN
RVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRIN
DME75A_3 736 cgtggagtgtctggcttggtagttcctaccaactcctaaacctaaccaa
gtggaaccgtaagtacgaggagttggctaaataagcgcaaaaggttgta
ctcgtgcctctccgtccgtcgaccccccgagcgtcgccgtggcctgcct
E75A_DROME 295 RNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSTQNRGQQ
RNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSTQNRGQQ
RNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSTQNRGQQ
DME75A_3 883 cactcttccaatagggaacgggctgcgcacgagcacggaccaacacgcc
gaggaaggtaagtctgtggactgtggtcagaacgttcctaagcaaggaa
ctttatccgagctcgcgtcttgttacgggcaggtcggcgagccgtccgg
E75A_DROME 344 RALATELDDQPRLLAAVLRAHLETCEFTKEKVSAMRQRARDCPSYSMPT
RALATELDDQPRLLAAVLRAHLETCEFTKEKVSAMRQRARDCPSYSMPT
RALATELDDQPRLLAAVLRAHLETCEFTKEKVSAMRQRARDCPSYSMPT
DME75A_3 1030 cgcgagcggcccccgggccgccgatgtaagagtgacccgcgtctttaca
gctccataaacgttccttgcatacgatcaaatcctgagcgagccactcc
accccggtcgacccccggccccgctgccgggcggggggggtcccccgca
E75A_DROME 393 LLACPLNPAPELQSEQEFSQRFAHVIRGVIDFAGMIPGFQLLTQDDKFT
LLACPLNPAPELQSEQEFSQRFAHVIRGVIDFAGMIPGFQLLTQDDKFT
LLACPLNPAPELQSEQEFSQRFAHVIRGVIDFAGMIPGFQLLTQDDKFT
DME75A_3 1177 ccgtccacgcgcctgcgttcctgcgacggagtggaacgtcccacggata
ttcgctacccatacaaatcagtcattggttatcgttcgtattcaaaatc
tgctggccctagaggggcggtcccatccgcctccgtcccggccgctgcg
E75A_DROME 442 LLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLVD
LLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLVD
LLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLVD
DME75A_3 1324 ccaggctggctgccatatgttaataatcagcgaccggacaggagctcgg
ttacgttactttgttgttacctacttgtagattggactaagcacgttta
cgggaccccgtgcgccgtcggacacctatcgggagtgcgcactcccggc
E75A_DROME 491 STFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLK
STFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLK
STFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLK
DME75A_3 1471 tatatggcaataacagggagcttgagcaacgccgtcacgcagaattcca
cctatcagtactatcacatgttgcttttccagcgtgatattaatacgta
ccctcggcgcggcgatcgacgcccctgtggtcctgccgggcgggcgacg
E75A_DROME 540 GCLQYIVAQNRPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFRTEHKEL
GCLQYIVAQNRPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFRTEHKEL
GCLQYIVAQNRPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFRTEHKEL
DME75A_3 1618 gtcctaggcaacgccgtcgatcgaacgccacaaccagacggtcagcagc
ggtaattcaagcaacattcattactcatgctgctacaattttgcaaaat
ccggctccgtgctgcgcgcggggggctgccgccgccgagatcccgcggg
E75A_DROME 589 LRQQMWSMEDGNNSDGQQNKSPSGSWADAMDVEAAKSPLGSVSSTESAD
LRQQMWSMEDGNNSDGQQNKSPSGSWADAMDVEAAKSPLGSVSSTESAD
LRQQMWSMEDGNNSDGQQNKSPSGSWADAMDVEAAKSPLGSVSSTESAD
DME75A_3 1765 ccccattagggaaaggccaatctgatgggagggggaaccgtgtaagtgg
tgaatgctaagaagagaaaacccgggcactataccagctgctcgcacca
gcggggcggccccctcggcggcgccggtcgcgggcgtgtcgagctgccc
E75A_DROME 638 LDYGSPSSSQPQGVSLPSPPQQQPSALASSAPLLAATLSGGCPLRNRAN
LDYGSPSSSQPQGVSLPSPPQQQPSALASSAPLLAATLSGGCPLRNRAN
LDYGSPSSSQPQGVSLPSPPQQQPSALASSAPLLAATLSGGCPLRNRAN
DME75A_3 1912 cgtgacaatcccggtcctcccccctgcgatgcccggactggtcccacga
taaggcggcacagtctccccaaaccctcgcccttccctcgggctgagca
gccctgctggagcgtgcggtgagcgtgccgttgggccccaatcgccgct
E75A_DROME 687 SGSSGDSGAAEMDIVGSHAHLTQNGLTITPIVRHQQQQQQQQQIGILNN
SGSSGDSGAAEMDIVGSHAHLTQNGLTITPIVRHQQQQQQQQQIGILNN
SGSSGDSGAAEMDIVGSHAHLTQNGLTITPIVRHQQQQQQQQQIGILNN
DME75A_3 2059 tgtaggtggggagaggtcgccacagcaaacagcccccccccccagacaa
cgcggacgccatattgcacatcaagtctccttgaaaaaaaaaatgttaa
cccctccaatggtctcgcatccgcggacggtgacgggaaggggcaactt
E75A_DROME 736 AHSRNLNGGHAMCQQQQQHPQLHHHLTAGAARYRKLDSPTDSGIESGNE
AHSRNLNGGHAMCQQQQQHPQLHHHLTAGAARYRKLDSPTDSGIESGNE
AHSRNLNGGHAMCQQQQQHPQLHHHLTAGAARYRKLDSPTDSGIESGNE
DME75A_3 2206 gctcataggcgatcccccccccccctaggggctaacgtcagtgagtgag
cacgataggactgaaaaaacataaatccgccgagatacccacgtacgaa
gtcccgtgacggcgagggcaagcccgacatcccagatgcgtgctggccg
E75A_DROME 785 KNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQVVQHPQLSVVSV
KNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQVVQHPQLSVVSV
KNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQVVQHPQLSVVSV
DME75A_3 2353 aagtaggatggattttacctaggggcgtaggggacacggcccccaggtg
aaagactgcgggccgcgcgcgtaactaggacccaaaattaacatgttct
gcgcgggtggatcgcctgtctgttggccctccctctggggtgggtggcg
E75A_DROME 834 SPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHK
SPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHK
SPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHK
DME75A_3 2500 tcgctccctaaaccaccagggacgcacgccgccctgaatcagggtacca
cctgccacccggatagattaatcttagttaccctaacacttaacaacaa
aatcgcgccccctggagtggtgcgggcgggtctgctccgggcgccggcg
E75A_DROME 883 KFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAA
KFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAA
KFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAA
DME75A_3 2647 atcgccccgtgagggggaatatgtaacaggacccacgcaaggaccctgg
atgctgagataccacacggcccgcagtgcggcgagctcagtcccccccc
acgcggtcgcgccggtcctctccgccgtcctgggcacgctgcgcgaggc
E75A_DROME 932 SAAAGNPAQSQLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKR
SAAAGNPAQSQLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKR
SAAAGNPAQSQLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKR
DME75A_3 2794 aggggacgcacccaccacaacagtagatctgcgatcaggccaacgcaac
gcccgaccagatatatcgggcacctcgcacttcacttcacgtccaatag
cccattccgcggcgcgcccccgcggccgcgggcgtcgcggcggcggggc
E75A_DROME 981 SDIIQNYLKRENSTAASSTTNGVGNRSPSSSSTPPPSAVQNQQRWGSSS
SDIIQNYLKRENSTAASSTTNGVGNRSPSSSSTPPPSAVQNQQRWGSSS
SDIIQNYLKRENSTAASSTTNGVGNRSPSSSSTPPPSAVQNQQRWGSSS
DME75A_3 2941 agaacattacgaaaggaaaaagggacacaaataccctggcaccctgaat
gattaaatagaagcccggccagtgaggcgggccccccctaaaagggggc
cttcaccggcgccaaccccctcgccctcccccagggggcgtggtgcccg
E75A_DROME 1030 VITTTCQQRQQSVSPHSNGSSSSSSSSSSSSSSSSSTSSNCSSSSASSC
VITTTCQQRQQSVSPHSNGSSSSSSSSSSSSSSSSSTSSNCSSSSASSC
VITTTCQQRQQSVSPHSNGSSSSSSSSSSSSSSSSSTSSNCSSSSASSC
DME75A_3 3088 gaaaatccccctgtccaagtatatatatatatttttattatatatgaat
ttcccgaagaactccagagcgcgcgcgcgcgccccccccaggcgccggg
gcccccggcggcgggccctccctgctcccctgacccacccccccgcccc
E75A_DROME 1079 QYFQSPHSTSNGTSAPASSSSGSNSATPLLELQVDIADSAQPLNLSKKS
QYFQSPHSTSNGTSAPASSSSGSNSATPLLELQVDIADSAQPLNLSKKS
QYFQSPHSTSNGTSAPASSSSGSNSATPLLELQVDIADSAQPLNLSKKS
DME75A_3 3235 cttctcctaaagaagcgatatgtaagacccgccggaggtgcccattaat
aataccaccgagcgcccgcgcgcagcccttatatatcaccactatcaac
gtcgggccccccctaggcctgagcccgcggagggcttcgggtctgcgag
E75A_DROME 1128 PTPPPSKLHALVAAANAVQRYPTLSADVTVTASNGGSSVGGGESGRQQQ
PTPPPSKLHALVAAANAVQRYPTLSADVTVTASNGGSSVGGGESGRQQQ
PTPPPSKLHALVAAANAVQRYPTLSADVTVTASNGGSSVGGGESGRQQQ
DME75A_3 3382 cacccaaccgcggggaggcatcattgggagagtaggttgggggtgcccc
cccccgatacttcccactagacctccatctcccaggcctgggacggaaa
cgggccggctggccctctagtcagccccagacctcgccccccgcccggg
E75A_DROME 1177 SAGECGLPQSGPERRRAQGNAGGVRAGGGRWFYAEKWERQRLGVAVQRS
SAGECGLPQSGPERRRAQGNAGGVRAGGGRWFYAEKWERQRLGVAVQRS
SAGECGLPQSGPERRRAQGNAGGVRAGGGRWFYAEKWERQRLGVAVQRS
DME75A_3 3529 tgggtgccctgcgcccgcgaggggaggggatttggatgacacggggcca
ccgaggtcacgcagggcagacggtgcgggggtacaagagagtgtctagg
cccgtgccacgtgcctaatttacaagaatggtcgggggagagagatgac
E75A_DROME 1226 RKQDHLERRELN
RKQDHLERRELN
RKQDHLERRELN
DME75A_3 3676 aacgctgccgta
gaaaataggata
gggtcggggggt
//
cmbi.kun.nl), 18-Feb-2005