Swiss-Prot entry

ID   Q90Y20_SCOMX PRELIMINARY;      PRT;   307 AA.
AC   Q90Y20;
DT   01-DEC-2001 (TrEMBLrel. 19, Created)
DT   01-DEC-2001 (TrEMBLrel. 19, Last sequence update)
DT   01-MAR-2004 (TrEMBLrel. 26, Last annotation update)
DE   Thyroid hormone receptor alpha (Fragment).
GN   Name=TR-alpha;
OS   Scophthalmus maximus (Turbot).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; 
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; 
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Pleuronectiformes; 
OC   Pleuronectoidei; Scophthalmidae; Scophthalmus. 
OX   NCBI_TaxID=52904;
RN   [1]
RP   NUCLEOTIDE SEQUENCE.
RX   MEDLINE=21094002; PubMed=11174854 [NCBI, ExPASy, EBI, Israel, Japan];
RA   Marchand O., Safi R., Escriva H., Van Rompaey E., Prunet P.,
RA   Laudet V.;
RT   "Molecular cloning and characterization of thyroid hormone receptors
RT   in teleost fish.";
RL   J. Mol. Endocrinol. 26:51-65(2001).
CC   -!- SUBCELLULAR LOCATION: Nuclear (By similarity).
CC   -!- SIMILARITY: Belongs to the nuclear hormone receptor family.
DR   EMBL; AF302253; AAL06733.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   HSSP; P10828; 1NQ0. [HSSP ENTRY / SWISS-3DIMAGE / PDB]
DR   GO; GO:0005634; C:nucleus; IEA.
DR   GO; GO:0003707; F:steroid hormone receptor activity; IEA.
DR   GO; GO:0004887; F:thyroid hormone receptor activity; IEA.
DR   GO; GO:0003700; F:transcription factor activity; IEA.
DR   GO; GO:0006355; P:regulation of transcription, DNA-dependent; IEA.
DR   GO; GO:0006350; P:transcription; IEA.
DR   InterPro; IPR000536; Hrmon_recept_lig.
DR   InterPro; IPR001723; Stdhrmn_receptor.
DR   InterPro; IPR001728; ThyrH_receptor.
DR   InterPro; IPR001628; Znf_C4steroid.
DR   InterPro; Graphical view of domain structure.
DR   Pfam; PF00104; Hormone_recep; 1.
DR   Pfam; PF00105; zf-C4; 1.
DR   Pfam; Graphical view of domain structure.
DR   PRINTS; PR00398; STRDHORMONER.
DR   PRINTS; PR00546; THYROIDHORMR.
DR   ProDom; PD000035; Znf_C4steroid; 1.
DR   ProDom [Domain structure / List of seq. sharing at least 1 domain ]
DR   SMART; SM00430; HOLI; 1.
DR   SMART; SM00399; ZnF_C4; 1.
DR   HOVERGEN [Family / Alignment / Tree]
DR   ProtoMap; Q90Y20.
DR   PRESAGE; Q90Y20.
DR   ModBase; Q90Y20.
DR   SMR; Q90Y20.
DR   SWISS-2DPAGE; GET REGION ON 2D PAGE.
KW   DNA-binding; Metal-binding; Nuclear protein; Receptor; Transcription;
KW   Transcription regulation; Zinc; Zinc-finger.
FT   NON_TER       1      1
FT   NON_TER     307    307
SQ   SEQUENCE   307 AA;  35161 MW;  0E805D7EF0DBA505 CRC64;
     GCKGFFRRTI QKNLHPAYSC KYEGCCIIDK ITRNQCQLCR FKKCISVGMA MDLVLGDSKR
     VAKRRLIEEN REKRKREEMV RTLQIRPEPN TEEWDLIKLV TEAHRHTNAQ GSSWKQKRKF
     LSDDIGQGPM VPTSDGDKVD LEAFSEFTKI MTPAITRVVD FAKKLPMFSE LPCEDQIILL
     KGCCMEIMSL RAAVRYDPES ETLTLNGEMA VKREQLKNGG LGVVSDAIFD LGKSLAQFNL
     DDTEVALMQA VLLMSSDRSG LTSVEKIEQC QEAYLLAFEH YINYRKHNIP HFWPKLLMKV
     TDLRMIG
//