Swiss-Prot entry

ID   Q7ZU39_BRARE PRELIMINARY;      PRT;   474 AA.
AC   Q7ZU39;
DT   01-JUN-2003 (TrEMBLrel. 24, Created)
DT   01-JUN-2003 (TrEMBLrel. 24, Last sequence update)
DT   01-MAR-2004 (TrEMBLrel. 26, Last annotation update)
DE   Similar to RAR-related orphan receptor A.
GN   ORFNames=zgc:55954;
OS   Brachydanio rerio (Zebrafish) (Danio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; 
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; 
OC   Cyprinidae; Danio. 
OX   NCBI_TaxID=7955;
RN   [1]
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=AB; TISSUE=Whole body;
RX   MEDLINE=22388257; PubMed=12477932 [NCBI, ExPASy, EBI, Israel, Japan]; DOI=10.1073/pnas.242603899;
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G.,
RA   Klausner R.D., Collins F.S., Wagner L., Shenmen C.M., Schuler G.D.,
RA   Altschul S.F., Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K.,
RA   Hopkins R.F., Jordan H., Moore T., Max S.I., Wang J., Hsieh F.,
RA   Diatchenko L., Marusina K., Farmer A.A., Rubin G.M., Hong L.,
RA   Stapleton M., Soares M.B., Bonaldo M.F., Casavant T.L., Scheetz T.E.,
RA   Brownstein M.J., Usdin T.B., Toshiyuki S., Carninci P., Prange C.,
RA   Raha S.S., Loquellano N.A., Peters G.J., Abramson R.D., Mullahy S.J.,
RA   Bosak S.A., McEwan P.J., McKernan K.J., Malek J.A., Gunaratne P.H.,
RA   Richards S., Worley K.C., Hale S., Garcia A.M., Gay L.J., Hulyk S.W.,
RA   Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., Gibbs R.A.,
RA   Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A.,
RA   Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C.,
RA   Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S.,
RA   Krzywinski M.I., Skalska U., Smailus D.E., Schnerch A., Schein J.E.,
RA   Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human
RT   and mouse cDNA sequences.";
RL   Proc. Natl. Acad. Sci. U.S.A. 99:16899-16903(2002).
RN   [2]
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=AB; TISSUE=Whole body;
RA   Strausberg R.;
RL   Submitted (APR-2003) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBCELLULAR LOCATION: Nuclear (By similarity).
CC   -!- DOMAIN: Composed of three domains: a modulating N-terminal domain,
CC       a DNA-binding domain and a C-terminal steroid-binding domain (By
CC       similarity).
CC   -!- SIMILARITY: Belongs to the nuclear hormone receptor family.
DR   EMBL; BC051158; AAH51158.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   HSSP; P35398; 1N83. [HSSP ENTRY / SWISS-3DIMAGE / PDB]
DR   Ensembl; ENSDARG00000001910; Danio rerio. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   ZFIN; ZDB-GENE-040426-855; zgc:55954.
DR   GO; GO:0005634; C:nucleus; IEA.
DR   GO; GO:0003707; F:steroid hormone receptor activity; IEA.
DR   GO; GO:0003700; F:transcription factor activity; IEA.
DR   GO; GO:0006355; P:regulation of transcription, DNA-dependent; IEA.
DR   GO; GO:0006350; P:transcription; IEA.
DR   InterPro; IPR000536; Hrmon_recept_lig.
DR   InterPro; IPR003079; ROR_receptor.
DR   InterPro; IPR001723; Stdhrmn_receptor.
DR   InterPro; IPR001628; Znf_C4steroid.
DR   InterPro; Graphical view of domain structure.
DR   Pfam; PF00104; Hormone_recep; 1.
DR   Pfam; PF00105; zf-C4; 1.
DR   Pfam; Graphical view of domain structure.
DR   PRINTS; PR01293; RORNUCRECPTR.
DR   PRINTS; PR00398; STRDHORMONER.
DR   PRINTS; PR00047; STROIDFINGER.
DR   ProDom; PD000035; Znf_C4steroid; 1.
DR   ProDom [Domain structure / List of seq. sharing at least 1 domain ]
DR   SMART; SM00430; HOLI; 1.
DR   SMART; SM00399; ZnF_C4; 1.
DR   CMR; Q7ZU39.
DR   HOVERGEN [Family / Alignment / Tree]
DR   ProtoMap; Q7ZU39.
DR   PRESAGE; Q7ZU39.
DR   ModBase; Q7ZU39.
DR   SMR; Q7ZU39.
DR   SWISS-2DPAGE; GET REGION ON 2D PAGE.
KW   DNA-binding; Metal-binding; Nuclear protein; Receptor; Repressor;
KW   Transcription; Transcription regulation; Zinc; Zinc-finger.
SQ   SEQUENCE   474 AA;  53451 MW;  CC86EE2FCE6A0635 CRC64;
     MYLMITAMKA QIESIPCKIC GDKSSGIHYG VITCEGCKGF FRGSQQGTVS YSCPRQKSCL
     IDRTSRNRCQ HCRLQKCLAV GMSRDAVKFG RMSKKQRDSL FAEVQKHRQQ QQDDKTGDES
     EKNQESQAPG EAEPLTPSYA LSSSGVTEIP DDLSGYVNGQ TQEEGKADSA IGGFYLDIQP
     SPDQSGLDMD GIKLEPVCDL SSDSGLDQYC CYSNGDASPP HDDLEHLSEN ICKSHLETCQ
     YLREELQPSN WQTVLQSNLE AYQKKSQEDM WQLCAVKVTE AVQYVVEFAK RIDGFMELCQ
     NDQIVLLKAG SLEVVFVRMC RAYNSQNNTV FFDSKYAGPE VFKALGCDDL ISSVFEFAKS
     LNSLQLSEDE IGLFSAYVLM SADRSWLQEK TRVEKLQQKI KIALQNLLQK NQRDEGILTK
     LVCKVSTVRM LCRHHMEKLS AFRALYPEMV HTRFPPLYKE LFGSDFEQIL PQEA
//