Swiss-Prot entry

ID   Q6P117_BRARE PRELIMINARY;      PRT;   402 AA.
AC   Q6P117;
DT   05-JUL-2004 (TrEMBLrel. 27, Created)
DT   05-JUL-2004 (TrEMBLrel. 27, Last sequence update)
DT   05-JUL-2004 (TrEMBLrel. 27, Last annotation update)
DE   Nuclear receptor subfamily 2, group F, member 6.
GN   Name=zgc:77259;
OS   Brachydanio rerio (Zebrafish) (Danio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; 
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; 
OC   Cyprinidae; Danio. 
OX   NCBI_TaxID=7955;
RN   [1]
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Embryo;
RX   MEDLINE=22388257; PubMed=12477932 [NCBI, ExPASy, EBI, Israel, Japan]; DOI=10.1073/pnas.242603899;
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G.,
RA   Klausner R.D., Collins F.S., Wagner L., Shenmen C.M., Schuler G.D.,
RA   Altschul S.F., Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K.,
RA   Hopkins R.F., Jordan H., Moore T., Max S.I., Wang J., Hsieh F.,
RA   Diatchenko L., Marusina K., Farmer A.A., Rubin G.M., Hong L.,
RA   Stapleton M., Soares M.B., Bonaldo M.F., Casavant T.L., Scheetz T.E.,
RA   Brownstein M.J., Usdin T.B., Toshiyuki S., Carninci P., Prange C.,
RA   Raha S.S., Loquellano N.A., Peters G.J., Abramson R.D., Mullahy S.J.,
RA   Bosak S.A., McEwan P.J., McKernan K.J., Malek J.A., Gunaratne P.H.,
RA   Richards S., Worley K.C., Hale S., Garcia A.M., Gay L.J., Hulyk S.W.,
RA   Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., Gibbs R.A.,
RA   Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A.,
RA   Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C.,
RA   Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S.,
RA   Krzywinski M.I., Skalska U., Smailus D.E., Schnerch A., Schein J.E.,
RA   Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human
RT   and mouse cDNA sequences.";
RL   Proc. Natl. Acad. Sci. U.S.A. 99:16899-16903(2002).
RN   [2]
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Embryo;
RA   Director MGC Project;
RL   Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Putative receptor that is required in photoreceptor
CC       cells precursors during eye development (By similarity).
CC   -!- SUBCELLULAR LOCATION: Nuclear (By similarity).
CC   -!- SIMILARITY: Belongs to the nuclear hormone receptor family.
DR   EMBL; BC065330; AAH65330.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   HSSP; P20393; 1A6Y. [HSSP ENTRY / SWISS-3DIMAGE / PDB]
DR   ZFIN; ZDB-GENE-030131-4362; zgc:77259.
DR   GO; GO:0005634; C:nucleus; IEA.
DR   GO; GO:0003707; F:steroid hormone receptor activity; IEA.
DR   GO; GO:0003700; F:transcription factor activity; IEA.
DR   GO; GO:0006355; P:regulation of transcription, DNA-dependent; IEA.
DR   GO; GO:0006350; P:transcription; IEA.
DR   GO; GO:0007601; P:visual perception; IEA.
DR   InterPro; IPR003068; COUP_TF.
DR   InterPro; IPR000536; Hrmon_recept_lig.
DR   InterPro; IPR001723; Stdhrmn_receptor.
DR   InterPro; IPR001628; Znf_C4steroid.
DR   InterPro; Graphical view of domain structure.
DR   Pfam; PF00104; Hormone_recep; 1.
DR   Pfam; PF00105; zf-C4; 1.
DR   Pfam; Graphical view of domain structure.
DR   PRINTS; PR01282; COUPTNFACTOR.
DR   PRINTS; PR00398; STRDHORMONER.
DR   PRINTS; PR00047; STROIDFINGER.
DR   ProDom; PD000035; Znf_C4steroid; 1.
DR   ProDom [Domain structure / List of seq. sharing at least 1 domain ]
DR   SMART; SM00430; HOLI; 1.
DR   SMART; SM00399; ZnF_C4; 1.
DR   PROSITE; PS00031; NUCLEAR_RECEPTOR; 1.
DR   CMR; Q6P117.
DR   HOVERGEN [Family / Alignment / Tree]
DR   ProtoMap; Q6P117.
DR   PRESAGE; Q6P117.
DR   ModBase; Q6P117.
DR   SMR; Q6P117.
DR   SWISS-2DPAGE; GET REGION ON 2D PAGE.
KW   DNA-binding; Metal-binding; Nuclear protein; Receptor; Transcription;
KW   Transcription regulation; Vision; Zinc; Zinc-finger.
SQ   SEQUENCE   402 AA;  44115 MW;  F7DABBB994FB7A36 CRC64;
     MAMVRGGWGD PNGETNGLGD KGYLRGDEDD GSPQGGGSDM EAGEDDKGCV VDCVVCGDKS
     SGKHYGVFTC EGCKSFFKRS VRRNLNYTCR SNRDCQIDQH HRNQCQYCRL KKCFRVGMRK
     EAVQRGRIPP SHSSLSPSTT PVGGNAGGGV SEFYNGQPVS ELISQLLRAE PYPNSRYSHQ
     YNQQMQGGGG GGSGMGIDSI CELAARLLFS IIEWARNIPY FPELPVSEQV ALLRLSWSEL
     FILNAAQSAL PLHMAPLLAA AGFHSSPMSA ERVVSFMDQV RVFQDQVEKL TRLQVDSAEY
     SCLKAIALFS PDACGLTDPA HVESLQEKAQ VALTEYERMQ YPGQPQRFGR LLLRLPALRA
     VPASLISQLF FMRLVGKTPI ETLIRDMQLS GSSISWPYAP GQ
//