Swiss-Prot entry

ID   NHR85_CAEEL    STANDARD;      PRT;   514 AA.
AC   Q9XUK7;
DT   28-FEB-2003 (Rel. 41, Created)
DT   28-FEB-2003 (Rel. 41, Last sequence update)
DT   01-MAY-2005 (Rel. 47, Last annotation update)
DE   Nuclear hormone receptor family member nhr-85.
GN   Name=nhr-85; ORFNames=W05B5.3;
OS   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; 
OC   Rhabditidae; Peloderinae; Caenorhabditis. 
OX   NCBI_TaxID=6239;
RN   [1]
RP   NUCLEOTIDE SEQUENCE (ISOFORMS A AND B).
RA   Robinson-Rechavi M., Maina C.V., Gissendanner C.R., Laudet V.,
RA   Sluder A.E.;
RT   "Explosive lineage-specific expansion of the orphan nuclear receptor
RT   HNF4 in nematodes.";
RL   Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Bristol N2;
RX   MEDLINE=99069613; PubMed=9851916 [NCBI, ExPASy, EBI, Israel, Japan];
RG   The C. elegans sequencing consortium;
RT   "Genome sequence of the nematode C. elegans: a platform for
RT   investigating biology.";
RL   Science 282:2012-2018(1998).
RN   [3]
RP   SEQUENCE REVISION.
RG   WormBase consortium;
RL   Submitted (AUG-2000) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Orphan nuclear receptor.
CC   -!- SUBCELLULAR LOCATION: Nuclear (Potential).
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=b;
CC         IsoId=Q9XUK7-1; Sequence=Displayed;
CC       Name=a;
CC         IsoId=Q9XUK7-2; Sequence=VSP_007340;
CC   -!- SIMILARITY: Belongs to the nuclear hormone receptor family.
CC   -!- SIMILARITY: Contains 1 nuclear receptor DNA-binding domain.
CC   --------------------------------------------------------------------------
CC   This Swiss-Prot entry is copyright. It is produced through a collaboration
CC   between  the Swiss Institute of Bioinformatics  and the  EMBL outstation -
CC   the European Bioinformatics Institute.  There are no  restrictions on  its
CC   use as long as its content is in no way modified and this statement is not
CC   removed.
CC   --------------------------------------------------------------------------
DR   EMBL; AY204180; AAO39184.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; AY204181; AAO39185.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; Z82071; CAB04919.2; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; AL110478; CAB04919.2; JOINED. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; AL110478; CAC14397.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; Z82071; CAC14397.1; JOINED. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   HSSP; P20393; 1A6Y. [HSSP ENTRY / SWISS-3DIMAGE / PDB]
DR   SMR; Q9XUK7; 111-191.
DR   WormBase; WBGene00003675; W05B5.3.
DR   WormPep; W05B5.3; CE26023. [WormPep / WormBase / WorfDB]
DR   InterPro; IPR000536; Hrmon_recept_lig.
DR   InterPro; IPR001723; Stdhrmn_receptor.
DR   InterPro; IPR008946; Str_ncl_receptor.
DR   InterPro; IPR000324; VitD_receptor.
DR   InterPro; IPR001628; Znf_C4steroid.
DR   InterPro; Graphical view of domain structure.
DR   Pfam; PF00104; Hormone_recep; 1.
DR   Pfam; PF00105; zf-C4; 1.
DR   Pfam; Graphical view of domain structure.
DR   PRINTS; PR00398; STRDHORMONER.
DR   PRINTS; PR00047; STROIDFINGER.
DR   PRINTS; PR00350; VITAMINDR.
DR   ProDom; PD000035; Znf_C4steroid; 1.
DR   ProDom [Domain structure / List of seq. sharing at least 1 domain ]
DR   SMART; SM00430; HOLI; 1.
DR   SMART; SM00399; ZnF_C4; 1.
DR   PROSITE; PS00031; NUCLEAR_REC_DBD_1; 1.
DR   PROSITE; PS51030; NUCLEAR_REC_DBD_2; 1.
DR   CMR; Q9XUK7.
DR   BLOCKS; Q9XUK7.
DR   ProtoNet; Q9XUK7.
DR   ProtoMap; Q9XUK7.
DR   PRESAGE; Q9XUK7.
DR   DIP; Q9XUK7.
DR   ModBase; Q9XUK7.
DR   SWISS-2DPAGE; GET REGION ON 2D PAGE.
KW   Alternative splicing; DNA-binding; Nuclear protein; Receptor;
KW   Transcription; Transcription regulation; Zinc-finger.
FT   DNA_BIND    110    186       Nuclear receptor-type.
FT   ZN_FING     113    133       C4-type.
FT   ZN_FING     150    174       C4-type.
FT   VARSPLIC      1    178       Missing (in isoform a).
FT                                /FTId=VSP_007340.
SQ   SEQUENCE   514 AA;  56132 MW;  D226A5A6FD7E96D9 CRC64;
     MDLSTSGSLP CHLPLSLLTN LQTPPIDTSF SSPPATSSSS LLSPSPSSAF RPVVPKSLMN
     PQPAMDTFYM SAIQSLVVST TNDDQYSEHG ALEGSKSLAK DENASTSAGT ILCQVCSDKA
     SGFHYGVFAC EGCKGFFRRS IQQKITYRAC TRAEDCLILR NNRNRCQCCR LKKCLAVGMS
     RDAVRFGRVP KREKARMFEE MQKTNVQSQR DQIAIQYENL TEVMHKINQA FGTLQATLEK
     CTGPIYTDRC PITSNFIVIP LKAAIDFANS IPAFLSITQT QRVHLLQNSV FDVMLLASAS
     ASTSQHFPPG GLTYDQSSAN PIIPQAIQSI SARIRQLPPQ TVPILTAIAV CQADLLPESQ
     QPMLLAERLW CVLGKLGGIQ SLATAPSLLA DVRTLRQWHS DRLRQMSQIS QHFSQNLLIA
     PVAAAAPVLL PPAFLSPPAS ATSTSSSSVK SEFIERHPSI ASLLERPRRI SSSGAQEPLN
     LSLPHVRHQV KRDVDSDEQL EEMKVSPVPT TLSE
//