Swiss-Prot entry

ID   NHR23_CAEEL    STANDARD;      PRT;   588 AA.
AC   P41828; Q17380; Q17584; Q9BJL3;
DT   01-NOV-1995 (Rel. 32, Created)
DT   28-FEB-2003 (Rel. 41, Last sequence update)
DT   01-MAY-2005 (Rel. 47, Last annotation update)
DE   Nuclear hormone receptor family member nhr-23 (Steroid hormone
DE   receptor family member chr-3).
GN   Name=nhr-23; Synonyms=chr-3; ORFNames=C01H6.5;
OS   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; 
OC   Rhabditidae; Peloderinae; Caenorhabditis. 
OX   NCBI_TaxID=6239;
RN   [1]
RP   NUCLEOTIDE SEQUENCE (ISOFORM B).
RC   STRAIN=Bristol N2;
RX   MEDLINE=95116514; PubMed=7816808 [NCBI, ExPASy, EBI, Israel, Japan];
RA   Kostrouch Z., Kostrouchova M., Rall J.E.;
RT   "Steroid/thyroid hormone receptor genes in Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A. 92:156-159(1995).
RN   [2]
RP   NUCLEOTIDE SEQUENCE (ISOFORM A).
RA   Bogan A., Maina C.V., Yamamoto K., Cohen F., Sluder A.E.;
RT   "Caenorhabditis elegans nuclear receptor sequences exhibit biophysical
RT   compatibility with the ligand-binding domain fold.";
RL   Submitted (DEC-2000) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND ALTERNATIVE
RP   SPLICING.
RC   STRAIN=Bristol N2;
RX   MEDLINE=99069613; PubMed=9851916 [NCBI, ExPASy, EBI, Israel, Japan];
RG   The C. elegans sequencing consortium;
RT   "Genome sequence of the nematode C. elegans: a platform for
RT   investigating biology.";
RL   Science 282:2012-2018(1998).
RN   [4]
RP   NUCLEOTIDE SEQUENCE OF 36-73.
RC   STRAIN=Bristol N2;
RA   Kostrouchova M., Kostrouch Z., Krause M., Rall J.E.;
RL   Submitted (APR-1996) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Orphan nuclear receptor.
CC   -!- SUBCELLULAR LOCATION: Nuclear (Probable).
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=a;
CC         IsoId=P41828-1; Sequence=Displayed;
CC       Name=b;
CC         IsoId=P41828-2; Sequence=VSP_003722;
CC   -!- TISSUE SPECIFICITY: Expressed in both larval and adult tissues.
CC   -!- SIMILARITY: Belongs to the nuclear hormone receptor family. NR1
CC       subfamily.
CC   -!- SIMILARITY: Contains 1 nuclear receptor DNA-binding domain.
CC   --------------------------------------------------------------------------
CC   This Swiss-Prot entry is copyright. It is produced through a collaboration
CC   between  the Swiss Institute of Bioinformatics  and the  EMBL outstation -
CC   the European Bioinformatics Institute.  There are no  restrictions on  its
CC   use as long as its content is in no way modified and this statement is not
CC   removed.
CC   --------------------------------------------------------------------------
DR   EMBL; U13075; AAA96983.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; U51231; AAA97463.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; U51136; AAA96057.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; AF332203; AAK17974.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; AF332202; AAK17973.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; Z71258; CAD30427.1; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   EMBL; Z71258; CAA95782.2; -. [EMBL / GenBank / DDBJ] [CoDingSequence]
DR   HSSP; P03372; 1HCQ. [HSSP ENTRY / SWISS-3DIMAGE / PDB]
DR   WormBase; WBGene00003622; C01H6.5.
DR   WormPep; C01H6.5a; CE24775. [WormPep / WormBase / WorfDB]
DR   WormPep; C01H6.5b; CE30478. [WormPep / WormBase / WorfDB]
DR   InterPro; IPR000536; Hrmon_recept_lig.
DR   InterPro; IPR001723; Stdhrmn_receptor.
DR   InterPro; IPR008946; Str_ncl_receptor.
DR   InterPro; IPR000324; VitD_receptor.
DR   InterPro; IPR001628; Znf_C4steroid.
DR   InterPro; Graphical view of domain structure.
DR   Pfam; PF00104; Hormone_recep; 1.
DR   Pfam; PF00105; zf-C4; 1.
DR   Pfam; Graphical view of domain structure.
DR   PRINTS; PR00398; STRDHORMONER.
DR   PRINTS; PR00047; STROIDFINGER.
DR   PRINTS; PR00350; VITAMINDR.
DR   ProDom; PD000035; Znf_C4steroid; 1.
DR   ProDom [Domain structure / List of seq. sharing at least 1 domain ]
DR   SMART; SM00430; HOLI; 1.
DR   SMART; SM00399; ZnF_C4; 1.
DR   PROSITE; PS00031; NUCLEAR_REC_DBD_1; 1.
DR   PROSITE; PS51030; NUCLEAR_REC_DBD_2; 1.
DR   CMR; P41828.
DR   BLOCKS; P41828.
DR   ProtoNet; P41828.
DR   ProtoMap; P41828.
DR   PRESAGE; P41828.
DR   DIP; P41828.
DR   ModBase; P41828.
DR   SWISS-2DPAGE; GET REGION ON 2D PAGE.
KW   Alternative splicing; DNA-binding; Nuclear protein; Receptor;
KW   Transcription; Transcription regulation; Zinc-finger.
FT   DNA_BIND    160    235       Nuclear receptor-type.
FT   ZN_FING     163    183       C4-type.
FT   ZN_FING     199    223       C4-type.
FT   VARSPLIC      1     35       Missing (in isoform b).
FT                                /FTId=VSP_003722.
FT   CONFLICT     17     23       EMSSFVY -> YPPVTNS (in Ref. 2; AAK17973).
FT   CONFLICT    565    565       R -> Q (in Ref. 1).
SQ   SEQUENCE   588 AA;  65332 MW;  065075FF428DF6EB CRC64;
     MACKVTGPNR HLTSVLEMSS FVYWPRSRQQ AHNFPMQAVE QKLADATRTL HAKSSLQPSL
     SIETPKSKEN DESGCESSNC MFHPHTIKSE PNFCFAREFK SVPDDFRIGG GDLQMGNNSK
     RLTCVIDTNR VDMAGILPDN MSFRGLPENK SLLVSAQIEV IPCKVCGDKS SGVHYGVITC
     EGCKGFFRRS QSSIVNYQCP RQKNCVVDRV NRNRCQYCRL KKCIELGMSR DAVKFGRMSK
     KQREKVEDEV RMHKELAANG LGYQAIYGDY SPPPSHPSYC FDQSMYGHYP SGTSTPVNGY
     SIAVAATPTT PMPQNMYGAT PSSTNGTQYV AHQATGGSFP SPQVPEEDVA TRVIRAFNQQ
     HSSYTTQHGV CNVDPDCIPH LSRAGGWELF ARELNPLIQA IIEFAKSIDG FMNLPQETQI
     QLLKGSVFEL SLVFAAMYYN VDAQAVCGER YSVPFACLIA EDDAEMQLIV EVNNTLQEIV
     HLQPHQSELA LLAAGLILEQ VSSSHGIGIL DTATIATAET LKNALYQSVM PRIGCMEDTI
     HRIQDVETRI RQTARLHQEA LQNFRMSDPT SSEKLPALYK ELFTADRP
//