NucleaRDB Special clustering for SF1 mouse (ROR)

The logo  2005, NucleaRDB. 
('WHAT IF created MSF file')
Date= 2005-04-21 12:08:56
 
 Symbol comparison table: WHAT IF profile
                  ~GapWeight: 3.0
            ~GapLengthWeight: 0.1
 WHAT IF.Msf MSF:   0  Type: P  2005-04-21  12:00  Check:    0  ..
 
 Name: STF1_MOUSE          Len:   288  Check: 8454  Weight:  1.00
 Name: RXRA_HUMAN          Len:   288  Check: 4631  Weight:  1.00
 Name: RORB_RAT            Len:   288  Check: 1634  Weight:  1.00
 
//
 
                   1                                                   50
STF1_MOUSE         PLAGYL.YPA FSNRTIKSEY PEPYASPPQQ PGPP.YSYPE PFSGGPNVPE
RXRA_HUMAN         RQRNRCQYCR YQKCLAMGMK REAVQEERQR GKDRNENEVE STSSANEDMP
RORB_RAT           SGQPSPDQSG LDMTGIKQIK QEpySSFNNG QLAPGITMSE IDRIAQNIIK
 
                   51                                                 100
STF1_MOUSE         LILQLLQLEP EEDQVRARIV GCLQEPAKSR ..SDQPAPFS LLCRMADQTF
RXRA_HUMAN         VERILEAELA VEPKTETYVE ANMGLNPSS. ....PNDPVT NICQAADKQL
RORB_RAT           SHLETCQYTM EELHQLAWQT HTYEEIKAYq ..KSREALWQ QCAIQITHAI
 
                   101                                                150
STF1_MOUSE         ISIVDWARRC MVFKELEVAD QMTLLQNCWS ELLVLDHIYR QVQYGKEDSI
RXRA_HUMAN         FTLVEWAKRI PHFSELPLDD QVILLRAGWN ELLIASFSHR SIAVKDGILL
RORB_RAT           QYVVEFAKRI TGFMELCQND QILLLKSGCL EVVLVRMCRA FNPLNNTVLF
 
                   151                                                200
STF1_MOUSE         LLVTGQEVEL STVAVQAGSL LHSLVLRAQE LVLQLHALQL DRQEFVCLKF
RXRA_HUMAN         ATG....LHV HRNSAHSAGV GAIFDRVLTE LVSKMRDMQM DKTELGCLRA
RORB_RAT           ......EGKY GGMQMFKALG SDDLVNEAFD FAKNLCSLQL TEEEIALFSS
 
                   201                                                250
STF1_MOUSE         LILFSLDVKF LNNHSLVKDA QEKANAALLD YTLCHYPHCG DKFQQLLLCL
RXRA_HUMAN         IVLFNPDSKG LSNPAEVEAL REKVYASLEA YCKHKYPEQP GRFAKLLLRL
RORB_RAT           AVLISPDRAW LLEPRKVQKL QEKIYFALQH VIQKNHLDDE TLAKLIAKIP
 
                   251                                    288            
STF1_MOUSE         VEVRALSMQA KEYLYHKHLG NEMPRNNLLI EMLQAKQT
RXRA_HUMAN         PALRSIGLKC LEHLFFFKLI GDTPIDTFLM EMLEAPHQ
RORB_RAT           TITAVCNLHG EKLQVFKQSH PDIVNTLFPP LYKELFNP
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