NucleaRDB Special clustering for SF1 mouse (ROR)
2005, NucleaRDB.
SEQLENGTH 288
NALIGN 3
REMARK : WARNING: This alignment was generated fully automatically.
REMARK : It therefore highly likely that this alignment contains errors.
REMARK : We give no guarantees and can not be held responsible for errors.
REMARK : Small characters indicate insertions in the sequences relative
REMARK : to the profile ocurred.
Date= 2005-04-21 12:08:56
NOTATION : NR : Number of the sequence in the database.
NOTATION : ID : Identifier of the sequence.
NOTATION : STRID : Not relevant in this case.
NOTATION : %ID : Percent of residues identical with the consensus sequence.
NOTATION : %SIM : Convolution of sequence with profile
NOTATION : IFIR,ILAS : Not used.
NOTATION : JFIR,JLAS : Not used.
NOTATION : LALI : Not used.
NOTATION : NGAP : Not used.
NOTATION : LGAP : Not used.
NOTATION : LSEQ2 : Total length of the seq.
NOTATION : SEQW : Weight of the seq.
## PROTEINS : EMBL/SWISSPROT identifier and alignment statistics
NR. ID %IDE %SIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM SEQW PROTEIN
1 : STF1_MOUSE 0.74 0.96 0 0 0 0 0 0 0 462 P33242 0.5326 NR5A1 -- STEROIDOGENIC FACTOR 1 (STF-1) (SF-1) (STEROID HORMONE RECEPTOR AD4BP) (FUSHI TARAZU FACTOR HOMOLOG 1) (EMBRYO
2 : RXRA_HUMAN 0.31 0.48 0 0 0 0 0 0 0 462 P19793 0.5383 RXRA -- Retinoic acid receptor RXR-alpha.
3 : RORB_RAT 0.24 0.38 0 0 0 0 0 0 0 459 P45446 0.5616 RORB -- Nuclear receptor ROR-beta (Nuclear receptor RZR-beta).
## ALIGNMENTS 1 - 3
SeqNo PDBNo AA STRUCT Gap-O Gap-E ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 0 P 1.00 0.05 3 63 PRS
2 0 G 1.00 0.05 3 63 LQG
3 0 A 1.00 0.05 3 63 ARQ
4 0 G 1.00 0.05 3 63 GNP
5 0 R 1.00 0.05 3 63 YRS
6 0 C 1.00 0.05 3 63 LCP
7 0 D 1.00 0.05 2 34 -QD
8 0 Y 1.00 0.05 3 79 YYQ
9 0 C 1.00 0.05 3 63 PCS
10 0 A 1.00 0.05 3 63 ARG
11 0 F 1.00 0.05 3 63 FYL
12 0 D 1.00 0.05 3 63 SQD
13 0 K 1.00 0.05 3 63 NKM
14 0 C 1.00 0.05 3 63 RCT
15 0 G 1.00 0.05 3 63 TLG
16 0 I 1.00 0.05 3 79 IAI
17 0 K 1.00 0.05 3 79 KMK
18 0 G 1.00 0.05 3 63 SGQ
19 0 E 1.00 0.05 3 63 EMI
20 0 K 1.00 0.05 3 79 YKK
21 0 P 1.00 0.05 3 63 PRQ
22 0 E 1.00 0.05 3 100 EEE
23 0 P 1.00 0.05 3 79 PAp
24 0 Y 1.00 0.05 3 79 YVy
25 0 A 1.00 0.05 3 63 AQS
26 0 S 1.00 0.05 3 79 SES
27 0 E 1.00 0.05 3 63 PEF
28 0 N 1.00 0.05 3 63 PRN
29 0 Q 1.00 0.05 3 79 QQN
30 0 G 1.00 0.05 3 63 QRG
31 0 G 1.00 0.05 3 63 PGQ
32 0 G 1.00 0.05 3 63 GKL
33 0 A 1.00 0.05 3 63 PDA
34 0 P 1.00 0.05 3 79 PRP
35 0 G 1.00 0.05 2 34 -NG
36 0 E 1.00 0.05 3 63 YEI
37 0 N 1.00 0.05 3 63 SNT
38 0 E 1.00 0.05 3 63 YEM
39 0 P 1.00 0.05 3 63 PVS
40 0 E 1.00 0.05 3 100 EEE
41 0 I 1.00 0.05 3 63 PSI
42 0 D 1.00 0.05 3 63 FTD
43 0 S 1.00 0.05 3 79 SSR
44 0 G 1.44 0.07 3 63 GSI
45 0 A 3.19 0.16 3 79 GAA
46 0 A 8.00 0.40 3 63 PNQ
47 0 N 8.00 0.40 3 79 NEN
48 100 I 8.00 0.40 3 63 VDI
49 101 P 8.00 0.40 3 63 PMI
50 102 E 8.00 0.40 3 63 EPK
51 103 L 8.00 0.40 3 63 LVS
52 104 I 8.00 0.40 3 63 IEH
53 105 L 8.00 0.40 3 79 LRL
54 106 E 8.00 0.40 3 63 QIE
55 107 L 8.00 0.40 3 79 LLT
56 108 L 8.00 0.40 3 63 LEC
57 0 K 8.00 0.40 3 79 QAQ
58 0 C 8.00 0.40 3 63 LEY
59 0 E 8.00 0.40 3 63 ELT
60 0 P 8.00 0.40 3 63 PAM
61 0 D 8.00 0.40 3 79 EVE
62 200 E 8.00 0.40 3 100 EEE
63 201 D 8.00 0.40 3 63 DPL
64 202 Q 8.00 0.40 3 63 QKH
65 203 V 8.00 0.40 3 63 VTQ
66 204 Q 8.00 0.40 3 63 REL
67 205 A 8.00 0.40 3 79 ATA
68 206 K 8.00 0.40 3 63 RYW
69 207 I 8.00 0.40 3 63 IVQ
70 208 M 8.00 0.40 3 63 VET
71 0 A 8.00 0.40 3 63 GAH
72 0 C 8.00 0.40 3 63 CNT
73 0 L 8.00 0.40 3 63 LMY
74 0 Q 5.18 0.26 3 63 QGE
75 0 E 3.48 0.17 3 79 ELE
76 0 I 2.46 0.12 3 63 PNI
77 0 A 1.86 0.09 3 63 APK
78 0 A 1.50 0.07 3 63 KSA
79 0 S 1.28 0.06 3 79 SSY
80 0 Q 1.16 0.06 2 34 R-q
81 0 A 1.09 0.05 0 34 ---
82 0 R 1.49 0.07 0 34 ---
83 0 K 3.22 0.16 2 34 S-K
84 0 D 8.00 0.40 2 34 D-S
85 0 K 8.00 0.40 3 63 QPR
86 300 L 8.00 0.40 3 63 PNE
87 301 A 8.00 0.40 3 79 ADA
88 302 A 8.00 0.40 3 79 PPL
89 303 F 8.00 0.40 3 63 FVW
90 304 G 8.00 0.40 3 63 STQ
91 305 L 8.00 0.40 3 63 LNQ
92 306 L 8.00 0.40 3 63 LIC
93 307 C 8.00 0.40 3 79 CCA
94 308 K 8.00 0.40 3 63 RQI
95 309 M 8.00 0.40 3 63 MAQ
96 310 A 8.00 0.40 3 79 AAI
97 311 D 8.00 0.40 3 79 DDT
98 312 Q 8.00 0.40 3 63 QKH
99 313 T 8.00 0.40 3 63 TQA
100 314 F 8.00 0.40 3 63 FLI
101 315 F 8.00 0.40 3 63 IFQ
102 316 S 8.00 0.40 3 63 STY
103 317 I 8.00 0.40 3 63 ILV
104 318 V 8.00 0.40 3 100 VVV
105 319 D 8.00 0.40 3 79 DEE
106 320 W 8.00 0.40 3 79 WWF
107 321 A 8.00 0.40 3 100 AAA
108 322 R 8.00 0.40 3 79 RKK
109 0 R 8.00 0.40 3 100 RRR
110 0 C 8.00 0.40 3 79 CII
111 0 I 8.00 0.40 3 63 MPT
112 0 F 5.18 0.26 3 63 VHG
113 0 F 3.48 0.17 3 100 FFF
114 0 K 2.90 0.14 3 63 KSM
115 0 E 4.03 0.20 3 100 EEE
116 0 L 8.00 0.40 3 100 LLL
117 0 E 8.00 0.40 3 63 EPC
118 400 V 8.00 0.40 3 63 VLQ
119 401 A 8.00 0.40 3 63 ADN
120 402 D 8.00 0.40 3 100 DDD
121 403 Q 8.00 0.40 3 100 QQQ
122 404 M 8.00 0.40 3 63 MVI
123 405 K 8.00 0.40 3 63 TIL
124 406 L 8.00 0.40 3 100 LLL
125 407 L 8.00 0.40 3 100 LLL
126 408 Q 8.00 0.40 3 63 QRK
127 409 N 8.00 0.40 3 63 NAS
128 410 C 8.00 0.40 3 79 CGG
129 500 W 8.00 0.40 3 79 WWC
130 501 S 8.00 0.40 3 63 SNL
131 502 E 8.00 0.40 3 100 EEE
132 503 L 8.00 0.40 3 79 LLV
133 504 L 8.00 0.40 3 79 LLV
134 505 I 8.00 0.40 3 63 VIL
135 506 L 8.00 0.40 3 63 LAV
136 507 D 8.00 0.40 3 63 DSR
137 508 H 8.00 0.40 3 63 HFM
138 509 I 8.00 0.40 3 63 ISC
139 510 Y 8.00 0.40 3 63 YHR
140 511 R 8.00 0.40 3 79 RRA
141 512 Q 8.00 0.40 3 63 QSF
142 0 V 8.00 0.40 3 63 VIN
143 0 Q 8.00 0.40 3 63 QAP
144 0 H 8.00 0.40 3 63 YVL
145 0 G 5.18 0.26 3 63 GKN
146 0 D 3.48 0.17 3 63 KDN
147 0 E 2.46 0.12 3 63 EGT
148 0 D 1.86 0.09 3 63 DIV
149 0 L 1.50 0.07 3 79 SLL
150 0 F 1.28 0.06 3 63 ILF
151 0 A 1.16 0.06 2 34 LA-
152 0 L 1.09 0.05 2 34 LT-
153 0 G 1.05 0.05 2 34 VG-
154 0 T 1.03 0.05 1 10 T--
155 0 G 1.02 0.05 1 10 G--
156 0 Q 1.01 0.05 1 10 Q--
157 0 E 1.00 0.05 2 40 E-E
158 0 G 1.44 0.07 3 63 VLG
159 0 E 3.19 0.16 3 63 EHK
160 0 L 8.00 0.40 3 63 LVY
161 0 S 8.00 0.40 3 63 SHG
162 600 T 8.00 0.40 3 63 TRG
163 601 I 8.00 0.40 3 63 VNM
164 602 A 8.00 0.40 3 63 ASQ
165 603 S 8.00 0.40 3 63 VAM
166 604 Q 8.00 0.40 3 63 QHF
167 605 A 8.00 0.40 3 63 ASK
168 0 G 8.00 0.40 3 79 GAA
169 0 S 8.00 0.40 3 63 SGL
170 0 L 8.00 0.40 3 63 LVG
171 700 L 8.00 0.40 3 63 LGS
172 701 H 8.00 0.40 3 63 HAD
173 702 N 8.00 0.40 3 63 SID
174 703 L 8.00 0.40 3 79 LFL
175 704 V 8.00 0.40 3 79 VDV
176 705 L 8.00 0.40 3 63 LRN
177 706 R 8.00 0.40 3 63 RVE
178 707 A 8.00 0.40 3 79 ALA
179 708 Q 8.00 0.40 3 63 QTF
180 709 E 8.00 0.40 3 79 EED
181 710 L 8.00 0.40 3 79 LLF
182 711 V 8.00 0.40 3 79 VVA
183 712 L 8.00 0.40 3 63 LSK
184 713 Q 8.00 0.40 3 63 QKN
185 714 L 8.00 0.40 3 79 LML
186 715 R 8.00 0.40 3 63 HRC
187 716 A 8.00 0.40 3 63 ADS
188 0 L 8.00 0.40 3 79 LML
189 0 Q 8.00 0.40 3 100 QQQ
190 0 F 8.00 0.40 3 79 LML
191 0 D 8.00 0.40 3 79 DDT
192 800 Q 8.00 0.40 3 63 RKE
193 801 Q 8.00 0.40 3 63 QTE
194 802 E 8.00 0.40 3 100 EEE
195 803 F 8.00 0.40 3 63 FLI
196 804 V 8.00 0.40 3 63 VGA
197 805 C 8.00 0.40 3 79 CCL
198 806 L 8.00 0.40 3 79 LLF
199 807 K 8.00 0.40 3 63 KRS
200 808 F 8.00 0.40 3 63 FAS
201 809 L 8.00 0.40 3 63 LIA
202 810 I 8.00 0.40 3 79 IVV
203 811 L 8.00 0.40 3 100 LLL
204 0 F 8.00 0.40 3 79 FFI
205 0 S 8.00 0.40 3 79 SNS
206 0 L 8.00 0.40 3 79 LPP
207 0 D 5.18 0.26 3 100 DDD
208 0 R 3.48 0.17 3 63 VSR
209 0 K 2.46 0.12 3 79 KKA
210 0 F 2.29 0.11 3 63 FGW
211 0 L 3.68 0.18 3 100 LLL
212 0 E 8.00 0.40 3 63 NSL
213 0 N 8.00 0.40 3 79 NNE
214 900 H 8.00 0.40 3 79 HPP
215 901 Q 8.00 0.40 3 63 SAR
216 902 L 8.00 0.40 3 63 LEK
217 903 V 8.00 0.40 3 100 VVV
218 904 E 8.00 0.40 3 63 KEQ
219 905 D 8.00 0.40 3 63 DAK
220 906 A 8.00 0.40 3 79 ALL
221 907 Q 8.00 0.40 3 79 QRQ
222 908 E 8.00 0.40 3 100 EEE
223 909 K 8.00 0.40 3 100 KKK
224 910 A 8.00 0.40 3 63 AVI
225 911 N 8.00 0.40 3 79 NYY
226 912 A 8.00 0.40 3 79 AAF
227 913 A 8.00 0.40 3 79 ASA
228 914 L 8.00 0.40 3 100 LLL
229 915 L 8.00 0.40 3 63 LEQ
230 916 D 8.00 0.40 3 63 DAH
231 917 Y 8.00 0.40 3 79 YYV
232 918 T 8.00 0.40 3 63 TCI
233 919 L 8.00 0.40 3 63 LKQ
234 920 C 8.00 0.40 3 63 CHK
235 0 H 8.00 0.40 3 63 HKN
236 0 Y 8.00 0.40 3 79 YYH
237 0 P 8.00 0.40 3 79 PPL
238 0 H 8.00 0.40 3 63 HED
239 0 C 8.00 0.40 3 63 CQD
240 0 G 8.00 0.40 3 63 GPE
241 1000 D 8.00 0.40 3 63 DGT
242 1001 K 8.00 0.40 3 63 KRL
243 1002 F 8.00 0.40 3 79 FFA
244 1003 G 8.00 0.40 3 63 QAK
245 1004 Q 8.00 0.40 3 63 QKL
246 1005 L 8.00 0.40 3 79 LLI
247 1006 L 8.00 0.40 3 79 LLA
248 1007 L 8.00 0.40 3 79 LLK
249 1008 C 8.00 0.40 3 63 CRI
250 1100 L 8.00 0.40 3 79 LLP
251 1101 P 8.00 0.40 3 63 VPT
252 1102 E 8.00 0.40 3 63 EAI
253 1103 I 8.00 0.40 3 63 VLT
254 1104 R 8.00 0.40 3 79 RRA
255 1105 A 8.00 0.40 3 63 ASV
256 1106 I 8.00 0.40 3 63 LIC
257 1107 S 8.00 0.40 3 63 SGN
258 1108 M 8.00 0.40 3 79 MLL
259 1109 Q 8.00 0.40 3 63 QKH
260 1110 A 8.00 0.40 3 63 ACG
261 1111 E 8.00 0.40 3 63 KLE
262 1112 E 8.00 0.40 3 79 EEK
263 1113 Y 8.00 0.40 3 63 YHL
264 1114 L 8.00 0.40 3 79 LLQ
265 1115 Y 8.00 0.40 3 63 YFV
266 1116 H 8.00 0.40 3 79 HFF
267 1117 K 8.00 0.40 3 79 KFK
268 1118 H 8.00 0.40 3 63 HKQ
269 1119 L 8.00 0.40 3 79 LLS
270 0 G 8.00 0.40 3 63 GIH
271 0 G 8.00 0.40 3 63 NGP
272 0 D 8.00 0.40 3 79 EDD
273 0 M 5.62 0.28 3 63 MTI
274 0 P 5.62 0.28 3 79 PPV
275 0 R 8.00 0.40 3 63 RIN
276 0 N 8.00 0.40 3 63 NDT
277 1200 N 8.00 0.40 3 63 NTL
278 1201 L 8.00 0.40 3 79 LFF
279 1202 L 8.00 0.40 3 79 LLP
280 1203 I 8.00 0.40 3 63 IMP
281 1204 E 8.00 0.40 3 79 EEL
282 1205 M 8.00 0.40 3 79 MMY
283 1206 L 8.00 0.40 3 79 LLK
284 1207 H 8.00 0.40 3 79 QEE
285 0 A 8.00 0.40 3 79 AAL
286 0 K 8.00 0.40 3 63 KPF
287 0 Q 8.00 0.40 3 63 QHN
288 0 P 1.00 0.05 3 63 TQP
## FULL FILE NAMES
1 NR5A1 -- STEROIDOGENIC FACTOR 1 (STF-1) (SF-1) (STEROID HORMONE RECEPTOR AD4BP) (FUSHI TARAZU FACTOR HOMOLOG 1) (EMBRYONAL LTR BINDING PROTEIN) (ELP) (EMBRYONAL LONG TERMINAL REPEAT-BINDING PROTEIN) (STEROID HYDROXYLASE
2 RXRA -- Retinoic acid receptor RXR-alpha.
3 RORB -- Nuclear receptor ROR-beta (Nuclear receptor RZR-beta).
//
