NucleaRDB 5A2 Fetoprotein TF (LRH-1,FTF)
2005, NucleaRDB.
('WHAT IF created MSF file')
Date= 2005-04-20 20:01:18
Symbol comparison table: WHAT IF profile
~GapWeight: 3.0
~GapLengthWeight: 0.1
WHAT IF.Msf MSF: 0 Type: P 2005-04-20 12:00 Check: 0 ..
Name: NR5A2_HUMAN Len: 541 Check: 5772 Weight: 1.00
Name: Q9UEC0_HUMAN Len: 541 Check: 5916 Weight: 1.00
Name: Q9QWM0_RAT Len: 541 Check: 5351 Weight: 1.00
Name: Q9QWM1_RAT Len: 541 Check: 5939 Weight: 1.00
Name: NR5A2_MOUSE Len: 541 Check: 6998 Weight: 1.00
Name: NR5A2_CHICK Len: 541 Check: 1935 Weight: 1.00
Name: Q5XGE7_XENTR Len: 541 Check: 8497 Weight: 1.00
Name: Q9IB82_RANRU Len: 541 Check: 1671 Weight: 1.00
Name: Q91544_XENLA Len: 541 Check: 8997 Weight: 1.00
Name: Q9GKL1_HORSE Len: 541 Check: 6207 Weight: 1.00
Name: Q90YL6_BRARE Len: 541 Check: 5293 Weight: 1.00
Name: Q9IB81_RANRU Len: 541 Check: 1863 Weight: 1.00
Name: O42186_BRARE Len: 541 Check: 3664 Weight: 1.00
Name: Q91601_XENLA Len: 541 Check: 7891 Weight: 1.00
//
1 50
NR5A2_HUMAN MSSNSDTGDL QESLKHGLTP IGAGLPDRHG SPIPARGRLV MLPKVETEAL
Q9UEC0_HUMAN MSSNSDTGDL QESLKHGLTP IGAGLPDRHG SPIPARGRLV MLPKVETEAL
Q9QWM0_RAT MSASSITGDF QDFLKHGLPA IGAGLPDRHR RPIPARSRLV MLPKVETEAS
Q9QWM1_RAT APAPGSETPH SPKLEEKHRE KRAGLPDRHR RPIPARSRLV MLPKVETEAS
NR5A2_MOUSE ASAPGSETRH SPKREEQLRE KRAGLPDRHR RPIPARSRLV MLPKVETEAP
NR5A2_CHICK .......... .......... .......... .......... MLPKVETEAL
Q5XGE7_XENTR .......... .......... .......... .......... MLPKVEPEAL
Q9IB82_RANRU .......... .......... .......... .......... MLPKVESEAL
Q91544_XENLA .......... .......... .......... .......... MLPKVESEAL
Q9GKL1_HORSE .......... .......... .......... .......... MSSNLDT...
Q90YL6_BRARE .......... .......... .......... .......... MLPKVESEYL
Q9IB81_RANRU .......... .......... .......... .......... ..........
O42186_BRARE .......... .......... .......... .......... MLPKVESEYL
Q91601_XENLA .......... .......... .......... .......... MLPKVESEAL
51 100
NR5A2_HUMAN GLARSHGEQG QMPENMQVSQ FKMVNYSYDE DLEELCPVCG DKVSGYHYGL
Q9UEC0_HUMAN GLARSHGEQG QMPENMQVSQ FKMVNYSYDE DLEELCPVCG DKVSGYHYGL
Q9QWM0_RAT GLVRSHGEQG QMPENMQVSQ FKMVNYSYDE DLEELCPVCG DKVSGYHYGL
Q9QWM1_RAT GLVRSHGEQG QMPENMQVSQ FKMVNYSYDE DLEELCPVCG DKVSGYHYGL
NR5A2_MOUSE GLVRSHGEQG QMPENMQVSQ FKMVNYSYDE DLEELCPVCG DKVSGYHYGL
NR5A2_CHICK GLARSNGEQG QMPENMQVSQ FKMVNYSYDE DLEELCPVCG DKVSGYHYGL
Q5XGE7_XENTR GLSRSHGEQG HMPENMQASQ FKMMGYSYDE ELEEMCPVCG DKVSGYHYGL
Q9IB82_RANRU GLSRSHGEHG QMPDNMQVSQ FKMMGYSYDD DLEEMCPVCG DKVSGYHYGL
Q91544_XENLA GLSRLHGEQG HMPDNMQVSQ YKMMGYSYDD ELEELCPVCG DKVSGYHYGL
Q9GKL1_HORSE GDLRDSGKHG LTP...IVSQ FKMVNYSYDE DLEELCPVCG DKVSGYHYGL
Q90YL6_BRARE GLARSHGEQG HMPGNMQAPQ FKMMDYSYDE DLDEMCPVCG DKVSGYHYGL
Q9IB81_RANRU .......... .......... ..MMGYSYDD DLEEMCPVCG DKVSGYHYGL
O42186_BRARE GLARSHGEQG HMPGNMQAPQ FKMMDYSYDE DLDEMCPVCG DKVSGYHYGL
Q91601_XENLA GLSRLHGEQG HMPDNMQVSQ YKMMGYSYDD ELEELCPVCG DKVSGYHYGL
101 150
NR5A2_HUMAN LTCESCKGFF KRTVQNNKRY TCIENQNCQI DKTQRKRCPY CRFQKCLSVG
Q9UEC0_HUMAN LTCESCKGFF KRTVQNNKRY TCIENQNCQI DKTQRKRCPY CRFQKCLSVG
Q9QWM0_RAT LTCESCKGFF KRTVQNQKRY TCIENQNCQI DKTQRKRCPY CRFKKCIDVG
Q9QWM1_RAT LTCESCKGFF KRTVQNQKRY TCIENQNCQI DKTQRKRCPY CRFKKCIDVG
NR5A2_MOUSE LTCESCKGFF KRTVQNQKRY TCIENQNCQI DKTQRKRCPY CRFKKCIDVG
NR5A2_CHICK LTCESCKGFF KRTVQNNKRY TCIENQNCQI DKTQRKRCPY CRFQKCLSVG
Q5XGE7_XENTR LTCESCKGFF KRTVQNNKRY TCIENQSCQI DKTQRKRCPY CRFQKCLSVG
Q9IB82_RANRU LTCESCKGFF KRTVQNNKRY TCIENQTCQI DKTQRKRCPY CRFQKCLSVG
Q91544_XENLA LTCESCKGFF KRTVQNNKRY TCIENQSCPI DKTQRKRCPY CRFQKCLSVG
Q9GKL1_HORSE LTCESCKGFF KRTVQNNKRY TCIENQNCQI DKTQRKRCPY CRFQKCLSVG
Q90YL6_BRARE LTCESCKGFF KRTVQNNKRY TCIENQSCQI DKTQRKRCPY CRFQKCLTVG
Q9IB81_RANRU LTCESCKGFF KRTVQNNKRY TCIENQTCQI DKTQRKRCPY CRFQKCLSVG
O42186_BRARE LTCESCKGFF KRTVQNNKRY TCIENQSCQI DKTQRKRCPY CRFQKCLTVG
Q91601_XENLA LTCESCKGFF KRTVQNNKRY TCIENQSCPI DKTQRKRCPY CRFQKCLSVG
151 200
NR5A2_HUMAN MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMSQVI
Q9UEC0_HUMAN MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMSQVI
Q9QWM0_RAT MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMSQVI
Q9QWM1_RAT MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMSQVI
NR5A2_MOUSE MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMSQVI
NR5A2_CHICK MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMTQVI
Q5XGE7_XENTR MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMGQVI
Q9IB82_RANRU MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMSQVI
Q91544_XENLA MKLEAVRADR MRGGRNKFGP MYKRDRAIKQ QKKALIRANG LKLEAIGQVI
Q9GKL1_HORSE MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMSQVI
Q90YL6_BRARE MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMTQVM
Q9IB81_RANRU MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMSQVI
O42186_BRARE MKLEAVRADR MRGGRNKFGP MYKRDRALKQ QKKALIRANG LKLEAMTQVM
Q91601_XENLA MKLEAVRADR MRGGRNKFGP MYKRDRAIKQ QKKALIRANG LKLEAIGQVI
201 250
NR5A2_HUMAN QAMPSDLTIS SAIQNIHSAS KGLPLNHAAL PPTDYDRSPF VTSPISMTMP
Q9UEC0_HUMAN QAMPSDLTIS SAIQNIHSAS KGLPLNHAAL PPTDYDRSPF VTSPISMTMP
Q9QWM0_RAT QAMPSDLT.. SAIQNIHSAS KGLPLSHVAL PPTDYDRSPF VTSPISMTMP
Q9QWM1_RAT QAMPSDLT.. SAIQNIHSAS KGLPLSHVAL PPTDYDRSPF VTSPISMTMP
NR5A2_MOUSE QAMPSDLT.. SAIQNIHSAS KGLPLSHVAL PPTDYDRSPF VTSPISMTMP
NR5A2_CHICK QAMPTDLTIS SAIQNIHSAS KGLPLNHTAL PPTDYDRSPF VTSPISMTMP
Q5XGE7_XENTR QSIPTDLTIS SAIQNIHSAS KGLPLNHAAL PPSDYDRSPF VTSPISMAMP
Q9IB82_RANRU QAIPTDLTIS SAIQNIHSAS KGLPLNHTAL PPTDYDRSPF VTSPISMAMP
Q91544_XENLA QSIPTDLTIS SAIQNIHSAS KGLHLNHAAL PPSDYDRSPF VTSPISMAMP
Q9GKL1_HORSE QAMPSELSIS SAIQNIHSAS KGLPLNHAAL PPTDYDRSPF VTSPISMTMP
Q90YL6_BRARE QTVPADLTIT SAIQNIHSAS KGLPLShaGL PPADFDRSPF VTSPVSMAMP
Q9IB81_RANRU QAIPTDLTIS SAIQNIHSAS KGLPLNHTAL PPTDYDRSPF VTSPISMAMP
O42186_BRARE QTVPADLTIT SAIQNIHSAS KGLPLShaGL PPADFDRSPF VTSPVSMAMP
Q91601_XENLA QSIPTDLTIS SAIQNIHSAS KGLHLNHAAL PPSDYDRSPF VTSPISMAMP
251 300
NR5A2_HUMAN PHGSLQGYQT YGHFPSRAIK SEYPDPYTSS PESIMGYSYM DSYQTSSPAS
Q9UEC0_HUMAN PHGSLQGYQT YGHFPSRAIK SEYPDSYTSS PESIMGYSYM DSYQTSSPAS
Q9QWM0_RAT PHGSLHGYQP YGHFPNRAIK SEYPDPYSSS PESMMGYSYM DGYQTSSPAS
Q9QWM1_RAT PHGSLHGYQP YGHFPNRAIK SEYPDPYSSS PESMMGYSYM DGYQTSSPAS
NR5A2_MOUSE PHSSLHGYQP YGHFPSRAIK SEYPDPYSSS PESMMGYSYM DGYQTNSPAS
NR5A2_CHICK PHGSLQGYQT YGHFPSRAIK SEYPDPYTSS PESIMGYSYM DGYQTSSPAS
Q5XGE7_XENTR PHGSLQGYQA YGHFPSRAIK SEYPDPYTSS PESIMGYSYM DSYQSSSPSN
Q9IB82_RANRU PHGSLQSYQA YGHFPSRAIK SEYPDPYTSS PESLMGYSYM DSYQSSSPSN
Q91544_XENLA PHGSLQGYQS YGHFPSRAIK SEYPDPYTSS PESIMGYSYM DSYQSSSPSN
Q9GKL1_HORSE PHGSLQGYQT YSHFPSRAIK SEYPDPYTSS PESIMGYSYM DGYQTSSPAS
Q90YL6_BRARE PhgGLQGYQA YGHFQSRTIK SEYPDPYTSS PESLMGYPYV EAYAGGSPPS
Q9IB81_RANRU PHGSLQSYQA YGHFPSRAIK SEYPDPYTSS PESLMGYSYM DSYQSSSPSN
O42186_BRARE PhgGLQGYQA YGHFQSRTIK SEYPTP.TQA RQSPHGLPLR RSLRSGSPPS
Q91601_XENLA PHGSLQGYQS YGHFPSRAIK SEYPDPYTSS PESIMGYSFM DSYQSSSPSN
301 350
NR5A2_HUMAN IPHLILELLK CEPDEPQVQA KIMAYLQQEQ ANRSKHEKLS TFGLMCKMAD
Q9UEC0_HUMAN IPHLILELLK CEPDEPQVQA KIMAYLQQEQ ANRSKHEKLS TFGLMCKMAD
Q9QWM0_RAT IPHLILELLK CEPDEPQVQA KIMAYLQQEQ NNRNRQEKLS AFGLLCKMAD
Q9QWM1_RAT IPHLILELLK CEPDEPQVQA KIMAYLQQEQ NNRNRQEKLS AFGLLCKMAD
NR5A2_MOUSE IPHLILELLK CEPDEPQVQA KIMAYLQQEQ SNRNRQEKLS AFGLLCKMAD
NR5A2_CHICK IPHLILELQK CEPDEPQVQA KIMAYLQQEQ ANRSKHEKLN TFGLMCKMAD
Q5XGE7_XENTR IPHLIVELLK CEPDEPQVQG KIMAYLQQEQ ANRSKHDKLN TFGLMCKMAD
Q9IB82_RANRU IPHLIVELLK CEPDEPQVQS KIMSYLQQEQ ANRSKHDKLN TFGLMCKMAD
Q91544_XENLA IPHLIVELLK CEPDEPQVQG KIMAYLQQEQ ANRSKHDKLN TFGLMCKMAD
Q9GKL1_HORSE IPHLILELLK CEPDEPQVQA KIMAYLQQEQ ANRSKHEKLS TFGLMCKMAD
Q90YL6_BRARE FPHLVVELLK CEPDEPQVQA KILAYLQQEQ ASRGKHEKLN TFGLMCKMAD
Q9IB81_RANRU IPHLIVELLK CEPDEPQVQS KIMSYLQQEQ ANRSKHDKLN TFGLMCKMAD
O42186_BRARE FPHLVVELLK CEPDEPQVQA KILAYLQQEQ ASRGKHEKLN TFGLMCKMAD
Q91601_XENLA IPHLIVELLK CEPDEPQVQG KIMAYLQQEQ ANRSKHDKLN TFGLMCKMAD
351 400
NR5A2_HUMAN QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IYRQVVHGKE
Q9UEC0_HUMAN QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IYRQVVHGKE
Q9QWM0_RAT QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IYRQVAHGKE
Q9QWM1_RAT QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IYRQVAHGKE
NR5A2_MOUSE QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IYRQVAHGKE
NR5A2_CHICK QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IYRQVVHVKE
Q5XGE7_XENTR QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IFRQVLHGKE
Q9IB82_RANRU QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IFRQVLHGKE
Q91544_XENLA QTLFSIVEWA RSSIFFRDLK VDDQMKLLQN CWSELLILDH IFRQVLHGKE
Q9GKL1_HORSE QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IYRQVVHGKE
Q90YL6_BRARE QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH VFRQVMHAKE
Q9IB81_RANRU QTLFSIVEWA RSSIFFRELK VDDQMKLLQN CWSELLILDH IFRQVLHGKE
O42186_BRARE QTLFSIVEWA RSSIFFRELK VDDQMKLLQK CWRELLILDH VFRQVMHAKE
Q91601_XENLA QTLFSIVEWA RSSIFFRDLK KIK....... .......... ..........
401 450
NR5A2_HUMAN GSIFLVTGQQ VDYSIIASQA GATLNNLMSH AQELVAKLRS LQFDQREFVC
Q9UEC0_HUMAN GSIFLVTGQQ VDYSIIASQA GATLNNLMSH AQELVAKLRS LQFDQREFVC
Q9QWM0_RAT GTIFLVTGEH VDYSSIISNT EVAFNNLLSL AQELVVRLRS LQFDQREFVC
Q9QWM1_RAT GTIFLVTGEH VDYSSIISNT EVAFNNLLSL AQELVVRLRS LQFDQREFVC
NR5A2_MOUSE GTIFLVTGEH VDYSTIISHT EVAFNNLLSL AQELVVRLRS LQFDQREFVC
NR5A2_CHICK GSILLVTGQQ VDYSVIASQA GATLNNLMSH AQELVAKLRS LQFDLREFVC
Q5XGE7_XENTR GSILLVTGQQ VDYSVIVTQA GATLNNLMSH AQDLVAKLRS LQFDLREFVC
Q9IB82_RANRU GSILLVTGQQ VDFSVIVSQA GTTLNNLMSH AQELVAKLRS LQFDMREFVC
Q91544_XENLA GSILLVTGQQ VDYSVIVTQA GATLNNLMSH AQDLVAKLRS LQFDLREFVC
Q9GKL1_HORSE GSIFLVTGQQ VDYSIIASQA GATLNNLMSH AQELVAKLRS LQFDQREFVC
Q90YL6_BRARE GSILLVTGQQ VDYALIASQA GATLNNLLSH AQELVSKLRS LQLDQREFVC
Q9IB81_RANRU GSILLVTGQQ VDFSVIVSQA GTTLNNLMSH AQELVAKLRS LQFDMREFVC
O42186_BRARE GSILLVTGQQ VDYALIASQA GATLNNLLSH AQELVSKLRS LQLDQREFVC
Q91601_XENLA .......... .......... .......... .......... ..........
451 500
NR5A2_HUMAN LKFLVLFSLD VKNLENFQLV EGVQEQVNAA LLDYTMCNYP QQTEKFGQLL
Q9UEC0_HUMAN LKFLVLFSLD VKNLENFQLV EGVQEQVNAA LLDYTMCNYP QQTEKFGQLL
Q9QWM0_RAT LKFLVLFSSD VKNLENFQLV EGVQEQVNAA LLDYTLCNYP QQTEKFGQLL
Q9QWM1_RAT LKFLVLFSSD VKNLENFQLV EGVQEQVNAA LLDYTLCNYP QQTEKFGQLL
NR5A2_MOUSE LKFLVLFSSD VKNLENLQLV EGVQEQVNAA LLDYTVCNYP QQTEKFGQLL
NR5A2_CHICK LKFLVLFSLD VKNLENFQLV EGVQEQVNAA LLDYTMCNYP QQTDKFGQLL
Q5XGE7_XENTR LKFLVLFSLD VKNLENYQLV EGVQEQINAA LLDYTMCNYP QQTDKFGQLL
Q9IB82_RANRU LKFLVLFSLD VKNLENFQLV EGVQEQINAA LLDYTLCYYP QQTDKFGQLL
Q91544_XENLA LKFLVLFSLD VKTLENYQLV EGVQEQVNAA LLDYTMCNYP QQTDKFGQLL
Q9GKL1_HORSE LKFLVLFSLD VKNLENFQLV EGVQEQVNAA LLDYTMCNYP QQTEKFGQLL
Q90YL6_BRARE LKFLVLFSLD VKNLENFHLV ESVQEQVNAA LLDYVMCNYP QQTDKFGQLL
Q9IB81_RANRU LKFLVLFSLD VKNLENFQLV EGVQEQINAA LLDYTLCYYP QQTDKFGQLL
O42186_BRARE LKFLVLFSLD VKNLENFHLV ESVQEQVNAA LLDYVMCNYP QQTDKFGQLL
Q91601_XENLA .......... .......... .......... .......... ..........
501 541
NR5A2_HUMAN LRLPEIRAIS MQAEEYLYYK HLNGDVPYNN LLIEMLHAKR A
Q9UEC0_HUMAN LRLPEIRAIS MQAEEYLYYK HLNGDVPYNN LLIEMLHAKR A
Q9QWM0_RAT LRLPEIRAIS KQAEDYLYYK HVNGDVPYNN LLIEMLHAKR A
Q9QWM1_RAT LRLPEIRAIS KQAEDYLYYK HVNGDVPYNN LLIEMLHAKR A
NR5A2_MOUSE LRLPEIRAIS KQAEDYLYYK HVNGDVPYNN LLIEMLHAKR A
NR5A2_CHICK LRLPEIRAIS MQAEEYLYCK HLNGDVPCNN LLIEMLHAKR A
Q5XGE7_XENTR LRLPEIRAIS LQAEEYLYYK HLNGDVPCNN LLIEMLHAKR A
Q9IB82_RANRU LRLPEIRAIS LQAEEYLYYK HLNGDVPCNN LLIEMLHAKR A
Q91544_XENLA LRLPEIRAIS LQAEEYLYYK HLNGDVPCNN LLIEMLHAKR A
Q9GKL1_HORSE LRLPEIRAIS MQAEEYLYYK HLNGDVPYNN LLIEMLHAKR A
Q90YL6_BRARE LRLPEIRAIS LQAEEYLYYK HLNGDVPCNN LLIEMLHAKR A
Q9IB81_RANRU LRLPEIRAIS LQAEEYLYYK HLNGDVPCNN LLIEMLHAKR A
O42186_BRARE LRLPEIRAIS LQAEEYLYYK HLNGDVPCNN LLIEMLHAKR A
Q91601_XENLA .......... .......... .......... .......... .
