NucleaRDB 2F1 COUP-TFI
2005, NucleaRDB.
('WHAT IF created MSF file')
Date= 2005-04-20 19:48:26
Symbol comparison table: WHAT IF profile
~GapWeight: 3.0
~GapLengthWeight: 0.1
WHAT IF.Msf MSF: 0 Type: P 2005-04-20 12:00 Check: 0 ..
Name: COT1_HUMAN Len: 423 Check: 2509 Weight: 1.00
Name: COT1_BOVIN Len: 423 Check: 5101 Weight: 1.00
Name: COT1_MOUSE Len: 423 Check: 1229 Weight: 1.00
Name: Q62681_RAT Len: 423 Check: 8128 Weight: 1.00
Name: NR2F1_BRARE Len: 423 Check: 3408 Weight: 1.00
Name: Q9W745_XENLA Len: 423 Check: 4127 Weight: 1.00
Name: Q6PHF2_BRARE Len: 423 Check: 2588 Weight: 1.00
Name: Q6DCH6_XENLA Len: 423 Check: 8397 Weight: 1.00
Name: Q6PH18_BRARE Len: 423 Check: 809 Weight: 1.00
Name: Q6P0E6_BRARE Len: 423 Check: 9989 Weight: 1.00
//
1 50
COT1_HUMAN MAMVVSSWRD PQDDVAGGNP GGPNPAAQAA RGGGGGAGEQ QQQAGSGAPH
COT1_BOVIN MAMVVSSWRD PQDDVAGGNP GGPNPAAQAA RGGGGGAGEq qQQAGSGAPH
COT1_MOUSE MAMVVSSWRD PQDDVAGGNP GGPNPAAQAA RGGGGGAGE. QQQAGSGAPH
Q62681_RAT MAMVVSSWRD PQDDVAGGNP GGPNPAAQAA RGGGGGE... QQQAGSGAPH
NR2F1_BRARE MAMVVSVWRD PQEDVAGGPP SGPNPAAQPA RE........ QQQAASAAPH
Q9W745_XENLA MAMVVSSWRD PQEDVAGGNP GGPNPG...V RE........ QQQAPSAAPH
Q6PHF2_BRARE MAMVVSVWRD PQEDVAGGPP SGPNPAAQPA RE........ QQQAASAAPH
Q6DCH6_XENLA MAMVVSGWRD PQEDVAGGNP GGPNPG...V RE........ QQQAPSAAPH
Q6PH18_BRARE MAMVVSAWRD PQEELA.... .........A VD........ DQSA.AGREH
Q6P0E6_BRARE MAMVVSAWRD PQEELA.... .........A VD........ DQSA.AGREH
51 100
COT1_HUMAN TPQTPGQPGA PATPGTAGDK GQGPPGSGQS QQHIECVVCG DKSSGKHYGQ
COT1_BOVIN TPQTPGQPGA PATPGTAGDK GQGPPGSGQS QQHIECVVCG DKSSGKHYGQ
COT1_MOUSE TPQTPGQPGA PATPGTQGDK GQGPPGSGQS QQHIECVVCG DKSSGKHYGQ
Q62681_RAT TPQTPGQPGA PATPGTAGDK GQGPPGSGQS QQHIECVVCG DKSSGKHYGQ
NR2F1_BRARE TPQTPSQPGP PSTPGTAGDK GS..QNSGQS QQHIECVVCG DKSSGKHYGQ
Q9W745_XENLA TPQTPSQPGP PSTPGAAGDK GQ..QGSGQs qQHIECVVCG DKSSGKHYGQ
Q6PHF2_BRARE TPQTPSQPGP PSTPGTAGDK GS..QNSGQS QQHIECVVCG DKSSGKHYGQ
Q6DCH6_XENLA TPQTPSQPGP PSTPGAAGDK T......GQS .QHIECVVCG DKSSGKHYGQ
Q6PH18_BRARE .....LQHRH S..PKSAEEK AQ...IAAQN QQHVECVVCG DKSSGKHYGQ
Q6P0E6_BRARE .....LQHRH S..PKSAEEK AQ...IAAQN QQHVECVVCG DKSSGKHYGQ
101 150
COT1_HUMAN FTCEGCKSFF KRSVRRNLTY TCRANRNCPI DQHHRNQCQY CRLKKCLKVG
COT1_BOVIN FTCEGCKSFF KRSVRRNLTY TCRANRNCPI DQHHRNQCQY CRLKKCLKVG
COT1_MOUSE FTCEGCKSFF KRSVRRNLTY TCRANRNCPI DQHHRNQCQY CRLKKCLKVG
Q62681_RAT FTCEGCKSFF KRSVRRNLTY TCRANRNCPI DQHHRNQCQY CRLKKCLKVG
NR2F1_BRARE FTCEGCKSFF KRSVRRNLTY TCRANRNCPI DQHHRNQCQY CRLKKCLKVG
Q9W745_XENLA FTCEGCKSFF KRSVRRNLTY TCRANRNCPI DQHHRNQCQY CRLKKCLKVG
Q6PHF2_BRARE FTCEGCKSFF KRSVRRNLTY TCRANRNCPI DQHHRNQCQY CRLKKCLKVG
Q6DCH6_XENLA FTCEGCKSFF KRSVRRNLTY TCRANRNCPI DQHHRNQCQY CRFKKCLKVG
Q6PH18_BRARE FTCEGCKSFF KRSVRRNLSY TCRANRNCPV DQHHRNQCQY CRLKKCLKVG
Q6P0E6_BRARE FTCEGCKSFF KRSVRRNLSY TCRANRNCPV DQHHRNQCQY CRLKKCLKVG
151 200
COT1_HUMAN MRREAVQRGR MPPTQPNPGQ YALTNGDPLN GHCYLSGYIS LLLRAEPYPT
COT1_BOVIN MRREAVQRGR MPPTQPNPGQ YALTNGDPLN GHCYLSGYIS LLLRAEPYPT
COT1_MOUSE MRREAVQRGR MPPTQPNPGQ YALTNGDPLN GHCYLSGYIS LLLRAEPYPT
Q62681_RAT MRREAVQRGR MPPTQPNPGQ YALTNGDPLN GHCYLSGYIS LLLRAEPYPT
NR2F1_BRARE MRREAVQRGR MPPTQPNPGQ YALTNGDPLN GHCYLSGYIS LLLRAEPYPT
Q9W745_XENLA MRREAVQRGR MPPTQPNPGQ YALTNGDPLN GHCYLSGYIS LLLRAEPYPT
Q6PHF2_BRARE MRRE.VQRGR MPPTQPNPGQ YALTNGDPLN GHCYLSGYIS LLLRAEPYPT
Q6DCH6_XENLA MRRE.VQRGR MPPTQPNPGQ YALTNGDPLN GHCYLSGYIS LLLRAEPYPT
Q6PH18_BRARE MRREAVQRGR MPPNQPNPSH YALTNGDHLN GQCYLSGYIS LLLRAEPYPA
Q6P0E6_BRARE MRRE.VQRGR MPPNQPNPSH YALTNGDHLN GQCYLSGYIS LLLRAEPYPA
201 250
COT1_HUMAN SRYGSQCMQP NNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVS
COT1_BOVIN SRYGSQCMQP NNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVS
COT1_MOUSE SRYGSQCMQP NNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVS
Q62681_RAT SRYGSQCMQP NNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVS
NR2F1_BRARE SRYGSQCMQP NNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVS
Q9W745_XENLA SRYGSQCMQP NNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVA
Q6PHF2_BRARE SRYGSQCMQP NNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVS
Q6DCH6_XENLA SRYGSQCMQP NNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVA
Q6PH18_BRARE SRYGNQCMQS GNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVS
Q6P0E6_BRARE SRYGNQCMQS GNIMGIENIC ELAARLLFSA VEWARNIPFF PDLQITDQVS
251 300
COT1_HUMAN LLRLTWSELF VLNAAQCSMP LHVAPLLAAA GLHASPMSAD RVVAFMDHIR
COT1_BOVIN LLRLTWSELF VLNAAQCSMP LHVAPLLAAA GLHASPMSAD RVVAFMDHIR
COT1_MOUSE LLRLTWSELF VLNAAQCSMP LHVAPLLAAA GLHASPMSAD RVVAFMDHIR
Q62681_RAT LLRLTWSELF VLNAAQCSMP LHVA.VLAAA GLHASPMSAD RVVAFMDHIR
NR2F1_BRARE LLRLTWSELF VLNAAQCSMP LHVAPLLAAA GLHASPMSAD RVVAFMDHIR
Q9W745_XENLA LLRLTWSELF VLNAAQCSMP LHVAPLLAAA GLHASPMSAD RVVAFMDHIR
Q6PHF2_BRARE LLRLTWSELF VLNAAQCSMP LHVAPLLAAA GLHASPMSAD RVVAFMDHIR
Q6DCH6_XENLA LLRLTWSELF VLNAAQCSMP LHVAPLLAAA GLHASPMSAD RVVAFMDHIR
Q6PH18_BRARE LLRLTWSELF VLNAAQSSMP LHVAPLLAAA GLHASPMSAD RVVAFMDHIR
Q6P0E6_BRARE LLRLTWSELF VLNAAQSSMP LHVAPLLAAA GLHASPMSAD RVVAFMDHIR
301 350
COT1_HUMAN IFQEQVEKLK ALHVDSAEYS CLKAIVLFTS DACGLSDAAH IESLQEKSQC
COT1_BOVIN IFQEQVEKLK ALHVDSAEYS CLKAIVLFTS DACGLSDAAH IESLQEKSQC
COT1_MOUSE IFQEQVEKLK ALHVDSAEYS CLKAIVLFTS DACGLSDAAH IESLQEKSQC
Q62681_RAT IFQEQVEKLK ALHVDSAEYS CLKAIVLFTS DACGLSDAAH IESLQEKSQC
NR2F1_BRARE IFQEQVEKLK ALHVDSAEYS CIKAIVLFTS DACGLSDAAH IESLQEKSQC
Q9W745_XENLA IFQEQVEKLK ALHVDSAEYS CIKAIVLFTS DACGLSDAAH IESLQEKSQC
Q6PHF2_BRARE IFQEQVEKLK ALHVDSAEYS CIKAIVLFTS DACGLSDAAH IESLQEKSQC
Q6DCH6_XENLA IFQEQVEKLK ALHVDSAEYS CLKAIVLFTP DACGLSDAAH IESLQEKSQC
Q6PH18_BRARE FFQEQVEKLK ALQVDSAEYS CAKAIVLFTS DACGLSDIPH IEGLQEKSQC
Q6P0E6_BRARE FFQEQVEKLK ALQVDSAEYS CAKAIVLFTS DACGLSDIPH IEGLQEKSQC
351 400
COT1_HUMAN ALEEYVRSQY PNQPSRFGKL LLRLPSLRTV SSSVIEQLFF VRLVGKTPIE
COT1_BOVIN ALEEYVRSQY PNQPSRFGKL LLRLPSLRTV SSSVIEQLFF VRLVGKTPIE
COT1_MOUSE ALEEYVRSQY PNQPSRFGKL LLRLPSLRTV SSSVIEQLFF VRLVGKTPIE
Q62681_RAT ALEEYVRSQY PNQPSRFGKL LLRLPSLRTV SSSVIEQLFF VRLVGKTPIE
NR2F1_BRARE ALEEYVRSQY PNQPSRFGKL LLRLPSLRTV SSSVIEQLFF VRLVGKTPIE
Q9W745_XENLA ALEEYVRSQY PNQPSRFGKL LLRLPSLRTV SSSVIEQLFF VRLVGKTPIE
Q6PHF2_BRARE ALEEYVRSQY PNQPSRFGKL LLRLPSLRTV SSSVIEQLFF VRLVGKTPIE
Q6DCH6_XENLA ALEEYVRSQY PNQPSRFGKL LLRLPSLRTV SSSVIEQLFF VRLVGKTPIE
Q6PH18_BRARE ALEEYVRSQY PNQPTRFGKL LLRLPALRMV SSSVIEQLFF VRLVGKTPIE
Q6P0E6_BRARE ALEEYVRSQY PNQPTRFGKL LLRLPALRMV SSSVIEQLFF VRLVGKTPIE
401 423
COT1_HUMAN TLIRDMLLSG SSFNWPYMSI QCS
COT1_BOVIN TLIRDMLLSG SSFNWPYMSI QCS
COT1_MOUSE TLIRDMLLSG SSFNWPYMSI QCS
Q62681_RAT TLIRDMLLSG SSFNWPYMSI QCS
NR2F1_BRARE TLIRDMLLSG SSFNWPYMSI Q..
Q9W745_XENLA TLIRDMLLSG SSFNWPYMPI QCS
Q6PHF2_BRARE TLIRDMLLSG SSFNWPYMSI Q..
Q6DCH6_XENLA TLIRDMLLSG SSFNWPYMPI QCS
Q6PH18_BRARE TLIRDMLLSG SSFNWPYMPI Q..
Q6P0E6_BRARE TLIRDMLLSG SSFNWPYMPI Q..
