NucleaRDB 1B3 Retinoic acid gamma

The logo  2005, NucleaRDB.
                                                                                                                                                                                                        
                                                                                                                                                                                                        
CONSENSUS          MYDCMERLFAFGAGPRRLYPGAGPGAAFLRAARGSPPFEGLSSFAWLQPASLPKEMASLSVETQSTSSEEMVPSSPSPPP                                                                                                     
Q91YX2_MOUSE       MATNKERLFAPGagPGSGYPGAGFPFAFPGALRGSPPFEMLssFRGLGQPDLPKEMASLSVETQSTSSEEMVPSSPSPPP
RRG1_MOUSE         MATNKERLFAPGagPGSGYPGAGFPFAFPGALRGSPPFEMLssFRGLGQPDLPKEMASLSVETQSTSSEEMVPSSPSPPP
RRG1_HUMAN         MATNKERLFAAGagPGSGYPGAGFPFAFPGALRGSPPFEMLssFRGLGQPDLPKEMASLSVETQSTSSEEMVPSSPSPPP
RRG2_MOUSE         MYDCME...SFVPGPRRLYGAAGPGAGLLRRATGSSCFAGLESFAWAQPASL......QSVETQSTSSEEMVPSSPSPPP
Q8VHB6_MESAU       MYDCME...SFAPGPRRLYGAAGPGAGLLRRATGSSCFAGLESFAWAQPASL......QSVETQSTSSEEMVPSSPSPPP
RRG2_HUMAN         MYDCME...TFAPGPRRLYGAAGPGAGLLRRATGGSCFAGLESFAWPQPASL......QSVETQSTSSEEMVPSSPSPPP
Q9I8T3_AMBME       MYDCME...AFMLAPHPLYDVTNPGACMLRKARLSPCFGGLDPFGWPQPASL......QSVETQSTSSEEMVPSSPSPPP
Q9I8T2_AMBME       MYDCME...AFMLAPHPLYDVTNPGACMLRKARLSPCFGGLDPFGWPQPASL......QSVETQSTSSEEMVPSSPSPPP
RRG_NOTVI          MSSSKDRICSTSTQLSQlfPPSMYPFAFSSNMRGSPPFDLTNGGarSFPTDLPKEMASLSVETQSTSSEEMVPSSPSPPP
RRG_XENLA          MasSKERLCGAGagHANGFPPSVYPFAFSGGIRRSPPFEVLagFFRSFPTDLPKEMASLsvETQSTSSEEMVPSSPSPPP
RRG_BRARE          MFDCME...ALGMGPRQLYDVTNRGACMLRKA..SPFYAGLDPFAWTGTAS......VRSVETQSTSSEEMVPSSPSPPP
                                 D010      D020      D030      D040      D050      D060                                                                                                                 
                                   |=========|=========|=========|=========|=========|======                                                                                                            
CONSENSUS          PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRN                                                                                                     
Q91YX2_MOUSE       PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN
RRG1_MOUSE         PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN
RRG1_HUMAN         PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN
RRG2_MOUSE         PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN
Q8VHB6_MESAU       PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN
RRG2_HUMAN         PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN
Q9I8T3_AMBME       PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRN
Q9I8T2_AMBME       PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKeaVRN
RRG_NOTVI          PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRN
RRG_XENLA          PPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRN
RRG_BRARE          PPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRN
                                          140       150                         330       340                                                                                                           
                                        ===|=========|======                   ==|=========|=======                                                                                                     
CONSENSUS          DRNKKKKEVKEEGSPDSYELSPELEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIV                                                                                                     
Q91YX2_MOUSE       DRNKKKKEVKEEGLPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIV
RRG1_MOUSE         DRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIV
RRG1_HUMAN         DRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIV
RRG2_MOUSE         DRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIV
Q8VHB6_MESAU       DRNKKKKEVKEECSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIV
RRG2_HUMAN         DRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIV
Q9I8T3_AMBME       DRNKKKKEIKEEVVTDSYEMPPEMEALIAKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIV
Q9I8T2_AMBME       DRNKKKKEIKEEVVTDSYEMPPEMEALIAKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIV
RRG_NOTVI          DRNKKKKEIKEEVVTDSYEMPPEMEALIQKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWHKFSELATKCIIKIV
RRG_XENLA          DRNKKKKEIKEEVvpDSYEMPPEMEELIQKVSKAHQETFPSLCQLGKYTTNSSADQRVQLDLGLWDKFSELSTKCIIKIV
RRG_BRARE          DRNKKKKDVKDEvpPESYELSGELEELVNKVSKAHQETFPSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELSTKCIIKIV
                    350          450        550       560                 650       740      750                                                                                                        
                   ==|===      ===|==========|=========|                ===|===  ====|========|=                                                                                                        
CONSENSUS          EFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLE                                                                                                     
Q91YX2_MOUSE       EFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLE
RRG1_MOUSE         EFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLE
RRG1_HUMAN         EFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLE
RRG2_MOUSE         EFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLE
Q8VHB6_MESAU       EFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLE
RRG2_HUMAN         EFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLE
Q9I8T3_AMBME       EFAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLE
Q9I8T2_AMBME       EFAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLE
RRG_NOTVI          EFAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLE
RRG_XENLA          EFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLE
RRG_BRARE          EFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLE
                      850                     940       950           1040      1050      1060                                                                                                          
                     ==|=========          ====|=========|========    ==|=========|=========|=                                                                                                          
CONSENSUS          MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSKPYMFPRMLMKITDLRGISTKGAERAITLKM                                                                                                     
Q91YX2_MOUSE       MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM
RRG1_MOUSE         MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRDPAKPYMFPRMLMKITDLRGISTKGAERAITLKM
RRG1_HUMAN         MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM
RRG2_MOUSE         MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRDPAKPYMFPRMLMKITDLRGISTKGAERAITLKM
Q8VHB6_MESAU       MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM
RRG2_HUMAN         MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM
Q9I8T3_AMBME       MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKM
Q9I8T2_AMBME       MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKM
RRG_NOTVI          MDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERAITLKM
RRG_XENLA          MDDTETGLLSAICLICGDRMDLEEPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKL
RRG_BRARE          MDDTETGLLSAICLICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERAITLKM
                            1250                                                                                                                                                                        
                         =====|==                                                                                                                                                                       
CONSENSUS          EIPGPMPPLIREMLENPEMFEDDSSKPGKAEEKPIKVEPHPKASSEDEAPGGQGKRGQSPQPDQGP                                                                                                                   
Q91YX2_MOUSE       EIPGPMPPLIREMLENPEMFEDDSSKPG..........PHPKASSEDEAPGGQGKRGQSPQPDQGP..............
RRG1_MOUSE         EIPGPMPPLIREMLENPEMFEDDSSKPG..........PHPKASSEDEAPGGQGKRGQSPQPDQGP..............
RRG1_HUMAN         EIPGPMPPLIREMLENPEMFEDDSSQPG..........PHPNASSEDEVPGGQGKGGLKSPA..................
RRG2_MOUSE         EIPGPMPPLIREMLENPEMFEDDSSKPG..........PHPKASSEDEAPGGQGKRGQSPQPDQGP..............
Q8VHB6_MESAU       EIPGPMPPLIREMLENPEMFEDDSSKSG..........PHPKASSEDETPGGQGKVGLKPPT..................
RRG2_HUMAN         EIPGPMPPLIREMLENPEMFEDDSSQPG..........PHPNASSEDEVPGGQGKGGLKSPA..................
Q9I8T3_AMBME       EIPGPMPPLIREMLENPEAFEDDALSSPKAEEKPIKVEEIPAEKPSSKEL..............................
Q9I8T2_AMBME       EIPGPMPPLIREMLENPEAFEDDALSSPKAEEKPIKVEEIPAEKPSSKEL..............................
RRG_NOTVI          EIPGPMPPLIREMLENPEAFEDDASPPPKSEQKPIKVEEKPGEKTSTKDP..............................
RRG_XENLA          EIPGPMPPLIREMLENPEAFEDGAATpeRSSSESSNGSPTGEDSSGSKTP..............................
RRG_BRARE          EIPGPMPPLIREMLENPEAFEDQSEATEKKPEPEPPAPPPPALLTMKKEQEDEDDSWATENGSEPS..............

The top layer shows the consensus sequence. Residues are coloured after their physico-chemical properties. (GPX black; positive blue; negative red; CM yellow; H dark purple; NQ light purple; all others green).


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