NucleaRDB: phylogenetic trees

2005, NucleaRDB.

This list allows you to jump to the phylogenetic trees of the receptor families, subfamilies, groups, etc. The family names are hyperlinked to the family pages and the numbers (20,40,60,80) are hyperlinked to the trees.

Information is available for the following families:

Jump to the nuclear receptors sub-families:
Orphans:
- Unclassified nuclear receptors

All the receptors of families 1 to 6: for up to 20 , 40 , 60 , 80 sequences
1 Thyroid hormone like (TR,RAR,ROR,PPAR,VDR: for up to 20 , 40 , 60 , 80 sequences
- 1A Thyroid hormone (TR): for up to 20 , 40 sequences
  - 1A1 Thyroid hormone alpha: for up to 20 sequences
  - 1A2 Thyroid hormone beta: for up to 20 sequences
- 1B Retinoic acid (RAR): for up to 20 sequences
  - 1B1 Retinoic acid alpha: for up to 20 sequences
  - 1B2 Retinoic acid beta: for up to 20 sequences
  - 1B3 Retinoic acid gamma: for up to 20 sequences
- 1C Peroxisome proliferator activated (PPAR): for up to 20 , 40 sequences
  - 1C1 PPAR alpha: for up to 20 sequences
  - 1C2 PPAR beta: for up to 20 sequences
  - 1C3 PPAR gamma: for up to 20 sequences
- 1D REV-ERB (NRD1,NRD2,E75): for up to 20 sequences
  - 1D1 REV-ERB alpha: for up to 20 sequences
  - 1D2 REV-ERB beta: for up to 20 sequences
  - 1D3 E75: for up to 20 sequences
- 1E Ecdysone-inducible protein E78: tree not available
  - 1E1 E78: tree not available
- 1F RAR-related orphan receptor (ROR,HR3): for up to 20 sequences
  - 1F1 ROR alpha: for up to 20 sequences
  - 1F2 ROR beta: for up to 20 sequences
  - 1F3 ROR gamma: tree not available
  - 1F4 HR3,CHR3: for up to 20 sequences
- 1G CNR14: for up to 20 sequences
  - 1G1 CNR14: for up to 20 sequences
- 1H Ecdysone-like (ECR,LXR,FXR): for up to 20 , 40 sequences
  - 1H1 Ecdysone: for up to 20 sequences
  - 1H2 Oxysterol LXR beta: for up to 20 sequences
  - 1H3 Oxysterol LXR alpha: for up to 20 sequences
  - 1H4 Farnesoid FXR: for up to 20 sequences
- 1I Vitamin D3-like (VDR,PXR,CAR): for up to 20 sequences
  - 1I1 Vitamin D3 (VDR): for up to 20 sequences
  - 1I2 Pregnane X (PXR): for up to 20 sequences
  - 1I3 Constitutive Androstane alpha (CAR1): for up to 20 sequences
2 HNF4-like (HNF4,RXR,TLL,COUP,USP): for up to 20 , 40 , 60 , 80 sequences
- 2A Hepatocyte nuclear factor 4 (HNF4): for up to 20 sequences
  - 2A1 HNF4 alpha: for up to 20 sequences
  - 2A2 HNF4 gamma: for up to 20 sequences
  - 2A4 DHNF4: for up to 20 sequences
  - 2Ax HNF4 like: tree not available
- 2B Retinoic acid X (RXR,USP): for up to 20 , 40 sequences
  - 2B1 RXR alpha: for up to 20 sequences
  - 2B2 RXR beta: for up to 20 sequences
  - 2B3 RXR gamma: for up to 20 sequences
  - 2B4 USP: for up to 20 sequences
  - 2Bx RXR other: for up to 20 sequences
- 2C Orphan nuclear receptors TR2, TR4: for up to 20 sequences
  - 2C1 TR2: for up to 20 sequences
  - 2C2 TR4: for up to 20 sequences
  - 2Cx TR4-like: tree not available
- 2D DHR78: for up to 20 sequences
  - 2D1 DHR78: for up to 20 sequences
- 2E Tailless-like (TLL,TLX,PNR,DSF,FAX): for up to 20 sequences
  - 2E1 Tailless homolog (TLX): for up to 20 sequences
  - 2E2 Tailless (TLL): for up to 20 sequences
  - 2E3 Photoreceptor-specific (PNR): for up to 20 sequences
  - 2E4 Dissatisfaction: tree not available
  - 2E5 FAX-1: tree not available
  - Photoreceptor-specific like: tree not available
- 2F COUP-TF-like (COUP-TF,SVP,EAR2): for up to 20 sequences
  - 2F1 COUP-TFI: for up to 20 sequences
  - 2F2 COUP-TFII: for up to 20 sequences
  - 2F3 Seven-up (SVP): tree not available
  - 2F6 V-erbA related protein (EAR2): for up to 20 sequences
  - 2F Other: for up to 20 sequences
3 Estrogen like (ER,ERR,GR,MR,PR,AR): for up to 20 , 40 , 60 , 80 sequences
- 3A Estrogen (ER): for up to 20 , 40 , 60 , 80 sequences
  - 3A1 ER alpha: for up to 20 sequences
  - 3A2 ER beta: for up to 20 , 40 sequences
- 3B Estrogen-related (ERR): for up to 20 sequences
  - 3B1 ERR alpha: for up to 20 sequences
  - 3B2 ERR beta: for up to 20 sequences
  - 3B3 ERR gamma: tree not available
  - 3B ERR other: for up to 20 sequences
- 3C Glucocorticoid-like (GR,MR,PR,AR): for up to 20 , 40 , 60 , 80 sequences
  - 3C1 Glucocorticoid (GR): for up to 20 sequences
  - 3C2 Mineralocorticoid (MR): for up to 20 sequences
  - 3C3 Progesterone (PR): for up to 20 sequences
  - 3C4 Androgen (AR): for up to 20 sequences
4 Nerve Growth factor IB-like (NGFIB,NURR): for up to 20 sequences
- 4A NGFI-B-like (NGFI-B, NURR,NOR,HR38,CNR-8): for up to 20 sequences
  - 4A1 NGFI-B (HMR): for up to 20 sequences
  - 4A2 NURR1: for up to 20 sequences
  - 4A3 NOR1: for up to 20 sequences
  - 4A4 DHR38: for up to 20 sequences
  - 4A5 CNR-8: tree not available
5 Fushi tarazu-F1 like (SF1,FTF,FTZ-F1): for up to 20 , 40 sequences
- 5A Fushi tarazu-F1 like (FTZ-F1,FTF,SF1): for up to 20 , 40 sequences
  - 5A1 Steroidogenic factor-1 (SF1): for up to 20 sequences
  - 5A2 Fetoprotein TF (LRH-1,FTF): for up to 20 sequences
  - 5A3 Fushi tarazu-F1 (FTZ-F1): for up to 20 sequences
  - 5A4 Fushi tarazu-F1 (FF1B): for up to 20 sequences
- 5B DHR39: tree not available
  - 5B1 DHR39: tree not available
6 Germ cell nuclear factor like (GCNF1): for up to 20 sequences
- 6A Germ cell nuclear factor (GCNF1): for up to 20 sequences
  - 6A1 GCNF1: for up to 20 sequences
0A Knirps like (KNI,KNRL,EGON,ODR7) (no LBD): for up to 20 sequences
- 0A1 Knirps (KNI): tree not available
- 0A2 Knirps-related (KNRL): tree not available
- 0A5 Trithorax (TRX): tree not available
0B DAX like (DAX,SHP) (no DBD): for up to 20 sequences
- 0B1 DAX: for up to 20 sequences
- 0B2 SHP: for up to 20 sequences
Unclassified nuclear receptors: tree not available
- Vertebrate receptors: for up to 20 sequences
- Nematode receptors: tree not available
- Insect receptors: for up to 20 sequences
- Other receptors: for up to 20 sequences
Human receptors: for up to 20 sequences
Special clustering for SF1 mouse (RXR): for up to 20 sequences
Special clustering for SF1 mouse (ROR): for up to 20 sequences
Special clustering for COUP-TF1 human: for up to 20 sequences

F.Horn (nucleardbcmbi.kun.nl), 21-Apr-2005