NucleaRDB: Extraction of mutation data from the literature

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This data was extracted from Medline abstracts and full texts (when available) in an automated manner.

The table below describes different point mutations at a given position and provides links to other documents. The sentence(s) where the point mutations in VDR_HUMAN at position 236 were found are listed after the table.


Point mutations at position Y236 in VDR_HUMAN

ProteinVDR_HUMAN (P11473)    Gene: VDR,NR1I    (other point mutations)Swiss-Prot
Cross-reference table
Family page
PositionY236
General numbering (NucleaRDB) 341
DomainLBD HELIX 3
Family alignments 1I1 Vitamin D3 (VDR)
1I Vitamin D3-like (VDR,PXR,CAR)
1 Thyroid hormone like (TR,RAR,ROR,PPAR,VDR
Other point mutations at the same position Position 236 in 1I1 Vitamin D3 (VDR) family
Position 231 in 1I Vitamin D3-like (VDR,PXR,CAR) family
Position 224 in 1 Thyroid hormone like (TR,RAR,ROR,PPAR,VDR family
Reference #1Kraichely DM, Collins JJ 3rd, DeLisle RK, MacDonald PN
J Biol Chem 1999 May 14;274(20):14352-8.
Medline
Text sourceHTML and PDF full texts
Point mutationY236A (True positive)
Reference #2Mohr SC, Swamy N, Xu W, Ray R
Steroids 2001 Mar-May;66(3-5):189-201.
Medline
Text sourcePDF full text
Point mutationY236A (True positive)

Relevant sentences

Reference #1 (Kraichely DM et al.): Y236A
  • In particular , one mutant (VDR (Y236A)) exhibited normal ligand binding and heterodimerization with the retinoid X receptor (RXR) but was transcriptionally inactive

  • Yeast two-hybrid studies and in vitro protein interaction assays demonstrated that VDR (Y236A) was selectively impaired in interaction with AF-2-interacting coactivator proteins such as SRC-1 and GRIP-1

  • Specifically , a Y236A helix H3 mutation in the VDR selectively disrupted 1 , 25-(OH)2D3-induced interactions between VDR and SRC-1 or GRIP-1

  • Ligand-binding Assay-- GST-VDR wild-type and helix H3 point mutants (H229A , D232A , and Y236A) were expressed in the DH5 alpha strain of Escherichia coli and purified by glutathione-agarose affinity as described previously (23 , 24 )

  • The pAS1-VDR-(116-427) wild-type and Y236A mutant each contained the GAL4 DNA-binding domain (amino acids 1-147) and the carboxyl-terminal region of VDR (amino acids 116-427)

  • In Vitro Protein Interaction Assay-- GST-VDR-(116-427) wild-type or Y236A mutant and GST-RXR alpha -(235-493) were each individually expressed in the DH5 alpha strain of E

  • 35S-Labeled VDR-(4-427) wild-type or helix H3 point mutants (S225A , H229A , D232A , S235A , Y236A , and K240A) and SRC-1 or GRIP-1 were each generated using the TNT-coupled transcription-translation system according to the manufacturer (Promega , Madison , WI)

  • Altering these amino acids individually to alanine residues reduced (H229A or Y236A) or abolished (D232A) this autonomous transactivation activity (Fig. 1)

  • COS-7 cells were transfected with 5 µg of a (GAL4)5-TATA-GH reporter construct and increasing amounts (0.05 , 0.10 , or 0.25 µg) of pSG5 GAL4 , pSG5 GAL4-VDR-(195-238) wild-type , or the H229A , D232A , or Y236A mutants

  • To investigate the functional importance of amino acid residues within helix H3 for 1 , 25-(OH)2D3-activated transcription by full-length VDR , point mutations were introduced into the full-length pSG5-VDR-(4-427) plasmid , and the ability of these mutants (S225A , H229A , D232A , S235A , Y236A , and K240A) to activate transcription of a (VDRE)4-TATA-GH reporter gene in COS-7 cells was examined

  • Each transfection included 3 µg of a (VDRE)4-TATA-GH reporter construct and either 10 ng of pSG5-VDR-(4-427) wild-type or a mutant version (S225A , H229A , D232A , S235A , Y236A , or K240A)

  • Extracts were prepared from duplicate plates of COS-7 cells transfected with the wild-type pSG5-VDR-(4-427) and the helix H3 mutants (S225A , H229A , D232A , S235A , Y236A , and K240A) in pSG5-VDR-(4-427)

  • Similarly , 35S-labeled full-length VDR mutants (S225A , S235A , Y236A , and K240A) showed ligand-dependent interaction with RXR that was comparable with wild-type (lanes 7-8 , 19-20 , 23-24 , and 27-28)

  • A , interactions of 35S-labeled wild-type VDR-(4-427) or S225A , H229A , D232A , S235A , Y236A , and K240A mutants with purified GST-RXR alpha were analyzed in a GST pull-down assay

  • The Y236A mutation appeared to bind ligand with an affinity comparable with wild-type VDR

  • The Y236A mutant had a K D similar to wild-type VDR (0.2-0.3 nM) , whereas the H229A and D232A mutants had 4.5- and 8-fold lower affinities , respectively

  • In contrast , the loss of 1 , 25-(OH)2D3-mediated transactivation by the Y236A mutation could not be explained by this defect because it bound ligand with an affinity similar to that of wild-type VDR , and it interacted in a ligand-dependent manner with RXR

  • Bacterial-expressed and -purified GST-VDR-(116-427) wild-type ((image)) and mutants (open circle , Y236A ; black-square , H229A ; (image) , D232A) , or GST (black-triangle) (0.5 µg of protein) were combined with 4.5 µg of nuclear extract obtained from HeLa cells and incubated with increasing concentrations of 1 , 25-(OH)2-[3H]D3

  • Interactions between the Wild-Type VDR or Helix H3 Mutant Y236A and Coactivator Proteins-- These data suggested that the Y236A mutant must be defective in some other aspect of receptor action that did not include hormone binding or RXR heterodimerization

  • Therefore , the yeast two-hybrid system was used to assess the ability of wild-type VDR and mutant Y236A to interact with nuclear receptor coactivator proteins (Fig. 5 )

  • Interestingly , the helix H3 point mutant Y236A (pAS1-VDR-(116-427) Y236A) showed markedly reduced interaction with RIP-140 and essentially no interaction with SRC-1

  • Both wild-type and mutant Y236A retained strong interaction with RXR alpha in this system (data not shown)

  • No interaction was observed with the AD-GAL4 parent plasmid for either wild-type VDR or mutant Y236A

  • Thus , 1 , 25-(OH)2D3-dependent interactions between VDR (Y236A) and AF-2 coactivator proteins were dramatically impaired compared with wild-type VDR as determined by the yeast two-hybrid system

  • Interaction of wild-type VDR and VDR (Y236A) with SRC-1 and RIP-140 in a two-hybrid system

  • Yeast expressing the AS1-VDR-(116-427) wild-type or mutant pAS1-VDR-(116-427) Y236A and pAD-SRC-1 , pAD-RIP-140 , or pAD-GAL4 were grown for 16 h at 30 °C in the absence or presence of 10 -8 M 1 , 25-(OH)2D3

  • To confirm these in vivo yeast two-hybrid data , interactions between VDR (Y236A) and p160 coactivator proteins were examined in vitro by GST pull-down analysis

  • Only minimal interaction was detected with the liganded GST-VDR Y236A mutant (compare lanes 4 and 6)

  • Purified GST-VDR-(116-427) Y236A showed only very weak interaction in the presence of hormone (lane 6) (Fig. 6 B)

  • These findings indicate that mutant Y236A , despite retaining the ability to bind hormone and to heterodimerize with RXR , is selectively impaired in interaction with coactivator proteins both in yeast and in in vitro binding assays

  • In vitro interaction of wild-type VDR and VDR (Y236A) with full-length SRC-1 or GRIP-1

  • A , interactions of 35S-labeled full-length SRC-1 with purified GST-VDR-(116-427) wild-type or GST-VDR-(116-427) mutant Y236A were determined in a GST pull-down assay

  • In vitro transcribed and translated 35S-labeled SRC-1 was incubated with either 5 µg of GST (lane 2) , with 5 µg of GST-VDR-(116-427) wild-type (lanes 3-4) , or with 5 µg of GST-VDR-(116-427) mutant Y236A (lanes 5-6) in the absence (lanes 3 and 5) or presence (lanes 4 and 6) of 10 -8 M 1 , 25-(OH)2D3

  • B , interactions of 35S-labeled full-length GRIP-1 with purified GST-VDR-(116-427) wild-type or GST-VDR-(116-427) mutant Y236A was determined in a GST pull-down assay

  • In vitro transcribed and translated 35S-labeled GRIP-1 was incubated with either 5 µg of GST (lane 2) , with 5 µg of GST-VDR-(116-427) wild-type (lanes 3-4) , or with 5 µg of GST-VDR-(116-427) mutant Y236A (lanes 5-6) in the absence (lanes 3 and 5) or presence (lanes 4 and 6) of 10 -8 M 1 , 25-(OH)2D3

  • Effect of SRC-1 and GRIP-1 Coactivators on 1 , 25-(OH)2D3-Activated Transcription by Wild-type VDR and VDR (Y236A)-- Transient reporter gene expression assays in COS-7 cells were used to determine the effects of SRC-1 or GRIP-1 on 1 , 25-(OH)2D3-activated transcriptional activity by VDR and the Y236A mutant

  • As shown in Fig. 7 , cells were cotransfected with the full-length wild-type VDR or mutant Y236A and full-length SRC-1 or the pCR 3.1 parent vector using a (VDRE)4-TATA-GH reporter construct

  • The transcriptional enhancement observed with wild-type VDR was not apparent with mutant Y236A even in the presence of excess SRC-1

  • Similar results were obtained for both wild-type VDR and mutant Y236A in cells cotransfected with additional exogenous full-length GRIP-1

  • Additionally , although the wild-type VDR was maximally activated at 10 -8 M 1 , 25-(OH)2D3 , the Y236A mutant was inactive even when the cells were treated with higher concentrations of ligand (10 -6 M) ruling out the possibility of a partial ligand-binding defect (data not shown)

  • The overexpression of SRC-1 was previously shown to restore the transcriptional activity of a helix H3 point mutant (T277A in TR beta ) (29 ) ; however , we found that neither the overexpression of full-length SRC-1 or GRIP-1 could promote transactivation by the VDR mutant Y236A

  • Expression of SRC-1 or GRIP-1 augments ligand-activated transcription by wild-type VDR but not by the VDR (Y236A) mutant

  • COS-7 cells were cotransfected with 3 µg of a (VDRE)4-TATA-GH reporter construct and 10 ng of pSG5-VDR-(4-427) wild-type or 10 ng of pSG5-VDR-(4-427) mutant Y236A and 1 µg of either pCR 3.1 , pCR 3.1 SRC-1 , pSG5 , or pSG5 GRIP-1

  • This was most strikingly apparent in the Y236A mutation within the VDR helix H3 activation domain

  • While the Y236A mutation did not affect the ability of VDR to bind ligand or to heterodimerize with RXR , alteration of this single tyrosine residue selectively impaired both 1 , 25-(OH)2D3-dependent interaction with the AF-2 coactivators SRC-1 and GRIP-1 as well as 1 , 25-(OH)2D3-activated transcription

  • The essential nature of this helix H3 residue in coactivator function is apparent in Fig. 7 , wherein overexpression of SRC-1 or GRIP-1 dramatically augments 1 , 25-(OH)2D3-activated transcription mediated by wild-type VDR , but each exhibited absolutely no effect on transactivation mediated by the VDR (Y236A) mutant

  • However , our data also demonstrate that inactivation of the helix H3 domain through the Y236A mutation abolishes 1 , 25-(OH)2D3-mediated transactivation , indicating that the AF-2 domain is also nonfunctional in this context

  • Ligand-binding Assay--GST-VDR wild-type and helix H3 point mutants (H229A , D232A , and Y236A) were expressed in the DH5 strain of Escherichia coli and purified by glutathione-agarose affinity as described previously (23 , 24)

  • In Vitro Protein Interaction Assay--GST-VDR-(116 ­ 427) wild-type or Y236A mutant and GST-RXR -(235­ 493) were each individually expressed in the DH5 strain of E

  • To investigate the functional importance of amino acid residues within helix H3 for 1 , 25-(OH)2D3-activated transcription by full-length VDR , point mutations were introduced into the full-length pSG5-VDR-(4 ­ 427) plasmid , and the ability of these mutants (S225A , H229A , D232A , S235A , Y236A , and
    FIG

  • Both wildtype and mutant Y236A retained strong interaction with RXR in this system (data not shown)

  • Each transfection included --> g of a (VDRE)4-TATA-GH reporter construct and either 10 ng of pSG5-VDR-(4 ­ 427) wild-type or a mutant version (S225A , H229A , D232A , S235A , Y236A , or K240A)

  • VDR Helix H3 in Transactivation and Coactivator Interaction 14354 mutant Y236A

  • A , interactions of 35S-labeled wild-type VDR-(4 ­ 427) or S225A , H229A , D232A , S235A , Y236A , and K240A mutants with purified GST-RXR were analyzed in a GST pulldown assay

  • Bacterial-expressed and -purified GSTVDR-(116 ­ 427) wild-type (q) and mutants (E , Y236A ; f , H229A ; , D232A) , or GST (OE) (0.5 g of protein) were combined with 4.5 g of nuclear extract obtained from HeLa cells and incubated with increasing concentrations of 1 , 25-(OH)2[3H]D3

  • VDR Helix H3 in Transactivation and Coactivator Interaction 14355 was not apparent with mutant Y236A even in the presence of excess SRC-1

  • The overexpression of SRC-1 was previously shown to restore the transcriptional activity of a helix H3 point mutant (T277A in TR ) (29) ; however , we found that neither the overexpression of full-length SRC-1 or GRIP-1 could promote transactivation by the VDR mutant Y236A

  • In vitro transcribed and translated 35S-labeled SRC-1 was incubated with either 5 g of GST (lane 2) , with 5 g of GST-VDR-(116 ­ 427) wild-type (lanes 3­ 4) , or with 5 g of GST-VDR-(116 ­ 427) mutant Y236A (lanes 5­ 6) in the absence (lanes -->and 5) or presence (lanes 4 and 6) of 10 8 M 1 , 25-(OH)2D3

  • In vitro transcribed and translated 35S-labeled GRIP-1 was incubated with either 5 g of GST (lane 2) , with 5 g of GST-VDR-(116 ­ 427) wild-type (lanes 3­ 4) , or with 5 g of GST-VDR-(116 ­ 427) mutant Y236A (lanes 5­ 6) in the absence (lanes -->and 5) or presence (lanes 4 and 6) of 10 8 M 1 , 25-(OH)2D3

  • COS-7 cells were cotransfected with --> g of a (VDRE)4-TATA-GH reporter construct and 10 ng of pSG5-VDR-(4 ­ 427) wild-type or 10 ng of pSG5-VDR-(4 ­ 427) mutant Y236A and 1 g of either pCR 3.1 , pCR 3.1 SRC-1 , pSG5 , or pSG5 GRIP-1

Reference #2 (Mohr SC et al.): Y236A
  • Table 1 Natural* and designed mutations in VDR-LBD and their effects Change Effect (Reference) C190W* Familial VDRR-II [57] S225A Kd for ligand unchanged [44] H229A Kd for ligand increased by 27X [44] D232A Kd for ligand increased by 30X [44] V234A Kd for ligand almost unchanged [44] S235A Kd for ligand almost unchanged [44] Y236A Kd for ligand increased by 3.5X [44] S237A Kd for ligand increased by 27X [44] K240A Kd for ligand increased by 27X [44] I242A Kd for ligand increased by 27X [44] F244G Impaired transactivation [54] K246A Kd for ligand increased by 2X [44] L254G Impaired transactivation ; no RXR heterodimer formed [54] R274L* Ligand binding severely decreased ; VDRR-II [43] S275A Kd for ligand increased by 5.3X [44] M284A Ligand binding significantly reduced (Ray et al. , unpublished) M284S Ligand binding significantly reduced (Ray et al. , unpublished) W286A No ligand binding (Ray et al. , unpublished) W286F No ligand binding (Ray et al. , unpublished) C288G Ligand binding 'attenuated severely' at 37°C ; decreased 3X at 4°C , [25] Y295STOP* No ligand binding [55] D299A No ligand-binding (Ray et al. , unpublished) K302A No change in ligand-binding (Ray et al. , unpublished) H305Q* Ligand binding decreased 5X [55] I314S* Reduced transactivation ; high ligand concentration restores it ; RXR interaction diminished [53] C337G Ligand binding moderately decreased at 37°C [25] C369G Ligand binding only mildly affected at 37°C [25] K386Q Very slight decrease in ligand binding [52] L387STOP No ligand binding [52] R391C* Transactivation decreased together with RXR binding [53] L404STOP Kd for ligand increased by 10X [52] L417A No change in ligand binding ; transcriptional activation eliminated [56] L417S Ligand binding normal ; transactivation abolished (also coactivator binding) [52] V418S Significant reduction in ligand-binding (Ray et al. , unpublished) E420A No change in ligand binding ; transcriptional activation eliminated [56] E420Q Ligand binding normal ; transactivation abolished (also coactivator binding) [52] E425Q No effect on ligand binding or transactivation [52] S.C


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F.Horn (nucleardbcmbi.kun.nl), 21-Apr-2005