The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: Q7KS13_DROME
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence AE003748_146
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 2934.03 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
Q7KS13_DROME 1 MSGCDQSTVESLADDPTDSPFDADDCLKVRKYWCFLLSSIFTFLAGLLV
MSGCDQSTVESLADDPTDSPFDADDCLKVRKYWCFLLSSIFTFLAGLLV
MSGCDQSTVESLADDPTDSPFDADDCLKVRKYWCFLLSSIFTFLAGLLV
AE003748_146 1 atgtgcaaggttgggcagtctggggtcagcattttcctaatatcggccg
tcggaagctactcaaccacctacaagtatgaaggtttcgttcttcgttt
gggttactcaagcctaataaccctttcggcgcgctggccctacttcgcg
Q7KS13_DROME 50 VLLWRAFAFVCCRKEPDLGPNDPKQKEQKASRNKQEFEGTFMTEAKDWA
VLLWRAFAFVCCRKEPDLGPNDPKQKEQKASRNKQEFEGTFMTEAKDWA
VLLWRAFAFVCCRKEPDLGPNDPKQKEQKASRNKQEFEGTFMTEAKDWA
AE003748_146 148 gcctcgtgtgttcagcgcgcagcacagcagtcaacgtggataaggagtg
tttggctcttgggaacatgcaacaaaaaaccgaaaatagcttcacaagc
ggagaccactcccgggcggccccggggggacccaggcgcctgaagacgt
Q7KS13_DROME 99 GELISGQTTTGRILVVLVFILSIASLIIYFVDASSEEVERCQKWSNNIT
GELISGQTTTGRILVVLVFILSIASLIIYFVDASSEEVERCQKWSNNIT
GELISGQTTTGRILVVLVFILSIASLIIYFVDASSEEVERCQKWSNNIT
AE003748_146 295 ggcatgcaaagcatggcgtacaagtcaattgggtaggggatcataaaaa
gattcgacccggtttttttttgtcctttattaccgaataggaaggaatc
agtcgtaaattatgctcatacctacctactttatcaacaacaggtcctt
Q7KS13_DROME 148 QQIDLAFNIFFMVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIY
QQIDLAFNIFFMVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIY
QQIDLAFNIFFMVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIY
AE003748_146 442 ccagcgtaattagtttactaggtgacttatgatatggttaaccttgtat
aatatctatttttatttgttcccaatgtttatagttaatctcccttcta
agctcactattgtcttaacaggctgtgtgaagcttatttaacgccaaat
Q7KS13_DROME 197 LDRTWIGLRFLRALRLMTVPDILQYLNVLKTSSSIRLAQLVSIFISVWL
LDRTWIGLRFLRALRLMTVPDILQYLNVLKTSSSIRLAQLVSIFISVWL
LDRTWIGLRFLRALRLMTVPDILQYLNVLKTSSSIRLAQLVSIFISVWL
AE003748_146 589 tgcatagcctccgcccaagcgatcttagcaatatactgccgtatatgtt
tagcgtgtgttgctgttctcattaatattaccgctgtcattctttctgt
ataagcttattagatcgttattaatacaaaagccacgtaaaattacgga
Q7KS13_DROME 246 TAAGIIHLLENSGDPLDFNNAHRLSYWTCVYFLIVTMSTVGYGDVYCET
TAAGIIHLLENSGDPLDFNNAHRLSYWTCVYFLIVTMSTVGYGDVYCET
TAAGIIHLLENSGDPLDFNNAHRLSYWTCVYFLIVTMSTVGYGDVYCET
AE003748_146 736 agggaacccgatggccgtaagccttttatgttcagaataggtgggttga
cccgttattaacgactataacagtcagcgtattttctcctgagatagac
aagctatgggctctggtttttttagtgctctcatgcgagaattctctgt
Q7KS13_DROME 295 VLGRTFLVFFLLVGLAMFASSIPEIIELVGSGNKYGGELKREHGKRHIV
VLGRTFLVFFLLVGLAMFASSIPEIIELVGSGNKYGGELKREHGKRHIV
VLGRTFLVFFLLVGLAMFASSIPEIIELVGSGNKYGGELKREHGKRHIV
AE003748_146 883 gcgaatcgttccggtgatgaaacgaagcggagaatgggcaagcgaacag
ttggcttttttttgtcttcggtcattattgggaaaggatagaagagatt
cgaaatcgctgcccgagtcctaggataccttctgtctagaaacagattg
Q7KS13_DROME 344 VCGHITYESVSHFLKDFLHEDREDVDVEVVFLHRKPPDLELEGLFKRHF
VCGHITYESVSHFLKDFLHEDREDVDVEVVFLHRKPPDLELEGLFKRHF
VCGHITYESVSHFLKDFLHEDREDVDVEVVFLHRKPPDLELEGLFKRHF
AE003748_146 1030 gtgcaatgtgtctcagtccggcggggggggtcccaccgtgcggttacct
tggatcaactcattaattaaagaatatattttagaccatatagttagat
acttaacacggtcggccccatggtctcagctcttaactgatgtgcattt
Q7KS13_DROME 393 TTVEFFQGTIMNPIDLQRVKVHEADACLVLANKYCQDPDAEDAANIMRV
TTVEFFQGTIMNPIDLQRVKVHEADACLVLANKYCQDPDAEDAANIMRV
TTVEFFQGTIMNPIDLQRVKVHEADACLVLANKYCQDPDAEDAANIMRV
AE003748_146 1177 aaggttcgaaaacagccagagcggggtcgcgaattcgcggggggaaaag
cctattagcttactatagtataacacgtttcaaagaacacaaccattgt
ccggccaactgtgcttggtgttacccccgatcatcatccaattcccgac
Q7KS13_DROME 442 ISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGF
ISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGF
ISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGF
AE003748_146 1324 ataaataggacgaaccactcaagttcaacttgtacggggatcggcacgt
tctaaagaatgtttattaaaaacattatccgagaagaattgtcatatgt
cgcgccccctacccggggcctgacggcaaagtgagcctcccgcagggcc
Q7KS13_DROME 491 IAQSCLAPGFSTMMANLFAMRSFKTSPDTQAWQNDYLQGTGCEMYTETL
IAQSCLAPGFSTMMANLFAMRSFKTSPDTQAWQNDYLQGTGCEMYTETL
IAQSCLAPGFSTMMANLFAMRSFKTSPDTQAWQNDYLQGTGCEMYTETL
AE003748_146 1471 agcattgcgttaaagactgaattaatcgacgtcagtccgagtgatagac
tcaggtccgtccttcattctgctacccacacgaaaatagcggatacact
tcgttggcgcgcggctgccgagcggaacagcgattttatagtggccaca
Q7KS13_DROME 540 SPSFTGMTFPQASELCFSKLKLLLLAIEIKGAEEGADSKISINPRGAKI
SPSFTGMTFPQASELCFSKLKLLLLAIEIKGAEEGADSKISINPRGAKI
SPSFTGMTFPQASELCFSKLKLLLLAIEIKGAEEGADSKISINPRGAKI
AE003748_146 1618 tcttagaatccgagctttacaccccgagaagggggggaaataaccggaa
ccctcgtctcacgatgtcatattttctatagcaagcagatctacggcat
atatccgacaaccagtccgggtgggccgcgcaagggccgtccctggaac
Q7KS13_DROME 589 QANTQGFFIAQSADEVKRAWFYCKACHEDIKDETLIKKCKCKNLTVQPR
QANTQGFFIAQSADEVKRAWFYCKACHEDIKDETLIKKCKCKNLTVQPR
QANTQGFFIAQSADEVKRAWFYCKACHEDIKDETLIKKCKCKNLTVQPR
AE003748_146 1765 cgaacgttagcaggggacgttttagtcggaaggacaaatataatagcca
acacagtttcagcaatagcgtagacgaaataaacttaagagaatctacg
gcccgtccaaatccgggtcgcccagttgctgcgggcgacacacgttgcg
Q7KS13_DROME 638 SKFDDLDEHHPAPTFTPPELPKRVHVRGSVSGDITRDREDTNLLNRNVR
SKFDDLDEHHPAPTFTPPELPKRVHVRGSVSGDITRDREDTNLLNRNVR
SKFDDLDEHHPAPTFTPPELPKRVHVRGSVSGDITRDREDTNLLNRNVR
AE003748_146 1912 aatggtggcccgcataccgccacgcgcgtgtggaacgaggaaccacagc
gataataaaacccctcccatcagtatggctcgatcgagaacattagatg
cactcatacttacatttagacgggtgtatagttcttcaatgtactctgc
Q7KS13_DROME 687 RPNGTGNGTGGMHHMNNTAAAAAAAAAAGKQVNKVKPTVNVSRQVEGQV
RPNGTGNGTGGMHHMNNTAAAAAAAAAAGKQVNKVKPTVNVSRQVEGQV
RPNGTGNGTGGMHHMNNTAAAAAAAAAAGKQVNKVKPTVNVSRQVEGQV
AE003748_146 2059 ccagagagaggaccaaaagggggggggggacgaagacagagaccgggcg
gcagcgagcggtaataacccccccccccgaataatacctatggatagat
ggtctcctgtcgccgccgaggtgatgggaaggcgggaggtgcggggcag
Q7KS13_DROME 736 ISPSQYNRPTSRSSGTGTQNQNGGVSLPAGIADDQSKDFDFEKTEMKYD
ISPSQYNRPTSRSSGTGTQNQNGGVSLPAGIADDQSKDFDFEKTEMKYD
ISPSQYNRPTSRSSGTGTQNQNGGVSLPAGIADDQSKDFDFEKTEMKYD
AE003748_146 2206 atctctaacaacatgagacacagggttcggagggctagtgtgaagaatg
tcccaaagccgggcgcgcaaaaggtctccgtcaaacaatataacataaa
agaggccgggtctccgcagtatccacgccctgccgggcttcggcaggcc
Q7KS13_DROME 785 STGMFHWSPAKSLEDCILDRNQAAMTVLNGHVVVCLFADPDSPLIGLRN
STGMFHWSPAKSLEDCILDRNQAAMTVLNGHVVVCLFADPDSPLIGLRN
STGMFHWSPAKSLEDCILDRNQAAMTVLNGHVVVCLFADPDSPLIGLRN
AE003748_146 2353 tagatctacgaatggtacgcacggaagcagcgggtctggcgtccagcca
ccgttaggccagtaagttagaacctcttagatttgttcacaccttgtga
ggcgccgtgagcaaccagtccggcgcggcccgcgcgtctctgggtgggt
Q7KS13_DROME 834 LVMPLRASNFHYHELKHVVIVGSVDYIRREWKMLQNLPKISVLNGSPLS
LVMPLRASNFHYHELKHVVIVGSVDYIRREWKMLQNLPKISVLNGSPLS
LVMPLRASNFHYHELKHVVIVGSVDYIRREWKMLQNLPKISVLNGSPLS
AE003748_146 2500 cgacccgtatctcgcacggaggtggtaacgtaaccaccaatgcagtcca
tttctgccataaaataattttgctaatggagattaatcatcttagcctg
ggggggaccccccggacgccgcggccaacggggggcgcgcggccagggc
Q7KS13_DROME 883 RADLRAVNVNLCDMCCILSAKVPSNDDPTLADKEAILASLNIKAMTFDD
RADLRAVNVNLCDMCCILSAKVPSNDDPTLADKEAILASLNIKAMTFDD
RADLRAVNVNLCDMCCILSAKVPSNDDPTLADKEAILASLNIKAMTFDD
AE003748_146 2647 cggccggagactgattactgagcaaggcacggaggacgtcaaagaatgg
gcatgctatatgatggttccatcgaaacctcaaacttcctatactctaa
tccggctcctgttgcccgggattccctcggccgggcccggccgggctcc
Q7KS13_DROME 932 TIGVLSQRGPEFDNLSATAGSPIVLQRRGSVYGANVPMITELVNDSNVQ
TIGVLSQRGPEFDNLSATAGSPIVLQRRGSVYGANVPMITELVNDSNVQ
TIGVLSQRGPEFDNLSATAGSPIVLQRRGSVYGANVPMITELVNDSNVQ
AE003748_146 2794 aaggcaccgcgtgacagaggacagcccagtgtggagcaaagcgagaagc
ctgttgaggcataatgcccggctttagggctagcatcttcattaagata
gctgccgccggcctgccccctctgggggcgctcctgcgaaagctttcgg
Q7KS13_DROME 981 FLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNQNALTLIR
FLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNQNALTLIR
FLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNQNALTLIR
AE003748_146 2941 tcgcgggggcgagctcacctgtgagtggagtgtcataattacagtacac
ttaaaaaaacacatatcactcggcctctgttacttcccataaactcttg
tctacccttataactgggtccccacctgtgacgggcgtcctaccaggcc
Q7KS13_DROME 1030 SLITGGATPELELILAEGAGLRGGYSTVESLSNRDRCRVGQISLYDGPL
SLITGGATPELELILAEGAGLRGGYSTVESLSNRDRCRVGQISLYDGPL
SLITGGATPELELILAEGAGLRGGYSTVESLSNRDRCRVGQISLYDGPL
AE003748_146 3088 tcaagggacgcgcacgggggccggtaaggacaacgatcggcatctggct
cttcggcccatatttcagcgtgggagctagtgagagggtgatctaagct
agagcccgcggagcgcgatccgaccctggtgctacatagtacagcctgg
Q7KS13_DROME 1079 AQFGECGKYGDLFVAALKSYGMLCIGLYRFRDTSSSCDASSKRYVITNP
AQFGECGKYGDLFVAALKSYGMLCIGLYRFRDTSSSCDASSKRYVITNP
AQFGECGKYGDLFVAALKSYGMLCIGLYRFRDTSSSCDASSKRYVITNP
AE003748_146 3235 gctggtgatggctgggcattgactagttctagaatatggaaactgaaac
catgaggaagatttcctacagttgtgtagtgacgcggacggagattcac
tatggccgtgcatgaccggcaggccaacacgcccctttgccattaacca
Q7KS13_DROME 1128 PDDFSLLPTDQVFVLMQFDPGLEYKPPAVRAPAGGRGTNTQGSGVGGGG
PDDFSLLPTDQVFVLMQFDPGLEYKPPAVRAPAGGRGTNTQGSGVGGGG
PDDFSLLPTDQVFVLMQFDPGLEYKPPAVRAPAGGRGTNTQGSGVGGGG
AE003748_146 3382 cggttcccagcgtgtactgcgcgtaccggcgcgggcgaaacgtgggggg
caatcttccaatttttatacgtaaaccctgcccggggcacagcgtgggg
ctctaagaatgactagactgcggcggagaaatacatcccaatcgctgcc
Q7KS13_DROME 1177 SNKDDNS
SNKDDNS
SNKDDNS
AE003748_146 3529 taaggat
caaaaac
ccgttct
//
cmbi.kun.nl), 20-Jul-2005