The pairwise alignment has been generated with the "genewise" program of the Wise2 package. The output shows the protein sequence on the first line, followed by a line indicating the similarity level of the match, followed by 4 lines representing the DNA sequence; The DNA sequence descending in triplets, each triplet being a codon. The translation of each codon is shown above it.
Between the two protein sequences a line indicating the similarity of the match is printed. "+" indicates a conservative mismatch while "- "indicates a dramatic one. Mismatches are indicated by "***" in the left column in addition to "!" at the relevant position(s).
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: O45422_CAEEL
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence CEF31D4_7
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 1415.84 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info.
O45422_CAEEL 1 MLLSHGEHRQSFKQKRAEEKRRWSSSGSHHQPQAKQSLAVLAQLMLPAL
MLLSHGEHRQSFKQKRAEEKRRWSSSGSHHQPQAKQSLAVLAQLMLPAL
MLLSHGEHRQSFKQKRAEEKRRWSSSGSHHQPQAKQSLAVLAQLMLPAL
CEF31D4_7 1 atctcggcccttacaagggacatattgtcccccgacacggcgctaccgt
tttcagaagactaaagcaaaggggccgcaaacacaagtcttcatttcct
gacttaatggttagaaaagaaagtagtattatacagtaaggagggatga
O45422_CAEEL 50 IEEHTAQQEDVVVPTHYKADGSLSRTASNRRHVFQSVNLLQRANGQMRK
IEEHTAQQEDVVVPTHYKADGSLSRTASNRRHVFQSVNLLQRANGQMRK
IEEHTAQQEDVVVPTHYKADGSLSRTASNRRHVFQSVNLLQRANGQMRK
CEF31D4_7 148 aggcagccgggggcactagggattaagtacccgtcagaccccgagcaaa
taaaccaaaatttccaaacaggtcgcccaggattagtattagcagatga
tggtaggagtgtaatccaatatataaccctgcctatatagagactggaa
O45422_CAEEL 99 GAAGVWDIAGRAHLAGKRKVEQLQQKPPLWLVILNQAYHKYGLKHAVLI
GAAGVWDIAGRAHLAGKRKVEQLQQKPPLWLVILNQAYHKYGLKHAVLI
GAAGVWDIAGRAHLAGKRKVEQLQQKPPLWLVILNQAYHKYGLKHAVLI
CEF31D4_7 295 gggggtgaggcgccggacaggccccacccttgatacgtcatgtacggca
gccgtgatcggcatcgagataataaacctgttttaacaaaagtaacttt
ttaatgtttcatttcaaaaaaatgggtaggacagtaattataggcattc
O45422_CAEEL 148 IVFLIYCISGGLVFWLIEEPYQSELRDAWQHKIENNRTARVDAMMKKIF
IVFLIYCISGGLVFWLIEEPYQSELRDAWQHKIENNRTARVDAMMKKIF
IVFLIYCISGGLVFWLIEEPYQSELRDAWQHKIENNRTARVDAMMKKIF
CEF31D4_7 442 agtcattatggcgttcaggctctgccggtccaagaacagagggaaaaat
tttttagtcggtttgttaacaacatgacgaaataaagccgtacttaatt
cttcattactaggcgttaattagatgcagacacatcaagagtgggaatc
O45422_CAEEL 197 NNSDYLIYIKGNTSQRLTTFFIEELGSYENQLGVKWSQQKMDWDFWNAV
NNSDYLIYIKGNTSQRLTTFFIEELGSYENQLGVKWSQQKMDWDFWNAV
NNSDYLIYIKGNTSQRLTTFFIEELGSYENQLGVKWSQQKMDWDFWNAV
CEF31D4_7 589 aatgttataagaatcctaattaggtgttgaccggataccaagtgttagg
aacaattatagaccagtcctttaatgcaaaatgtaggaaatagatgact
ttttcgttcagttcagaaattaaaatctatatttagcaaagtgttgtat
O45422_CAEEL 246 LFAGTICTTIGYGHIYPMTDAGRMLTMIFALFGIPLMLLVLQDFGKLLT
LFAGTICTTIGYGHIYPMTDAGRMLTMIFALFGIPLMLLVLQDFGKLLT
LFAGTICTTIGYGHIYPMTDAGRMLTMIFALFGIPLMLLVLQDFGKLLT
CEF31D4_7 736 ctggaataaagtgcatcaagggaataaatgttgactaccgtcgtgacta
ttcgctgcctgagatactcacggttctttcttgtcttttttaatgattc
ttgcaactatttttctggcttaaggcgttaatataaggtcaattaatgc
O45422_CAEEL 295 ITMKFPWFQTKRLMRRIMRCCTKQPIEEMKEIERQERHDLDIFDLPLPV
ITMKFPWFQTKRLMRRIMRCCTKQPIEEMKEIERQERHDLDIFDLPLPV
ITMKFPWFQTKRLMRRIMRCCTKQPIEEMKEIERQERHDLDIFDLPLPV
CEF31D4_7 883 aaaatcttcaaccaaaaaattaaccaggaagagccgccgtgatgcctcg
tctatcgtacagttggttgggcaactaataatagaagaatattatctct
ttggcggtaaaatgaatgatcaaaataagaatgagatctgctttggatt
O45422_CAEEL 344 GIALIVTWIFICSFVLSVWDHNWTLLESFYFFFTSLSTVGLGDLVPSSP
GIALIVTWIFICSFVLSVWDHNWTLLESFYFFFTSLSTVGLGDLVPSSP
GIALIVTWIFICSFVLSVWDHNWTLLESFYFFFTSLSTVGLGDLVPSSP
CEF31D4_7 1030 gagtagatatatttgctgtgcataccgttttttatcaaggcggcgcttc
gtctttcgtttgctttctgaaagcttactatttcctgctgtgattcccc
attgatagcctcatacgagttcgatcaacttccatgtccttacgttttg
O45422_CAEEL 393 RLLITMFGFILVGLSLVSMVINLLQAKMKSTYEAGRNDEKTPHIHQTLP
RLLITMFGFILVGLSLVSMVINLLQAKMKSTYEAGRNDEKTPHIHQTLP
RLLITMFGFILVGLSLVSMVINLLQAKMKSTYEAGRNDEKTPHIHQTLP
CEF31D4_7 1177 cctaaatgtatggttcgtagaattcgaaatatgggcaggaaccaccatc
gtttcttgttttgtcttctttattacataccaacggaaaaccataactc
agatagtaccgtaggaacgtccggaaggaatcatcattaaaatttacac
O45422_CAEEL 442 TSLGVLQCFSPDEEKKTDYSERSLSRSTQTSLSLPGVRQVNNTASINLR
TSLGVLQCFSPDEEKKTDYSERSLSRSTQTSLSLPGVRQVNNTASINLR
TSLGVLQCFSPDEEKKTDYSERSLSRSTQTSLSLPGVRQVNNTASINLR
CEF31D4_7 1324 atcggcctttcgggaaagttgaataatacaataccggacgaaagaaata
cctgttagtccaaaaacaacaggtggccacgtgtcgtgataaccgtatg
catatgatccacaaagttcaaatgtattagtgcttcgagctcaatctga
O45422_CAEEL 491 LLLLQVVLRSDGVHWVNTDTSSPTKSPDEVTNLVEYETALRVCEQIGDN
LLLLQVVLRSDGVHWVNTDTSSPTKSPDEVTNLVEYETALRVCEQIGDN
LLLLQVVLRSDGVHWVNTDTSSPTKSPDEVTNLVEYETALRVCEQIGDN
CEF31D4_7 1471 ttctcggtctgggctgaagattcaatcgggaacggtgagccgtgcagga
ttttatttgcagtagtacacccccaccaatcattaaacctgtgaatgaa
aaaggacaaaccgtggcatcaatgaattaccccggtggtgtccaatttt
O45422_CAEEL 540 NNEEFSEAESLICETEVLLEVGECLSDLEEFLA
NNEEFSEAESLICETEVLLEVGECLSDLEEFLA
NNEEFSEAESLICETEVLLEVGECLSDLEEFLA
CEF31D4_7 1618 aaggttgggacatgaggctggggtctgtggtcg
aaaatcacagttgacatttatgagtcataattc
ttgacgaaacaacaaattaataatgacgaatat
//
cmbi.kun.nl), 28-Jul-2005