KChannelDB: Extraction of mutation data from the literature

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This data was extracted from Medline abstracts and full texts (when available) in an automated manner.

The table below describes different point mutations at a given position and provides links to other documents. The sentence(s) where the point mutations in KCNE3_HUMAN at position 72 were found are listed after the table.


Point mutations at position V72 in KCNE3_HUMAN

ProteinKCNE3_HUMAN (Q9Y6H6)    Gene: KCNE    (other point mutations)Swiss-Prot
Cross-reference table
Family page
PositionV72
General numbering (KChannelDB) 160
DomainTRANSMEM I
Family alignments IsK related channels (minK,MiRP,AMMECR2)
Potassium channels 1 TM
Other point mutations at the same position Position 58 in IsK related channels (minK,MiRP,AMMECR2) family
Position 58 in Potassium channels 1 TM family
Reference #1Melman YF, Krumerman A, McDonald TV
J Biol Chem 2002 Jul 12;277(28):25187-94.
Medline
Text sourceHTML full text
Point mutationV72A (Not yet checked)
Point mutationV72C (Not yet checked)
Point mutationV72I (Not yet checked)
Point mutationV72S (Not yet checked)
Point mutationV72T (Not yet checked)
Point mutationV72Y (Not yet checked)

Relevant sentences

Reference #1 (Melman YF et al.): V72A
  • Recordings are from CHO cells (obtained as in Fig. 1 ) transfected with KvLQT1 cDNA with V72S KCNE3 (scale bar = 4000 pA) (a) ; V72C KCNE3 (scale bar = 4000 pA) (b) ; V72A KCNE3 (scale bar = 5000 pA) (c) ; V72I KCNE3 (scale bar = 4000 pA) (d) ; V72Y KCNE3 (scale bar = 9000 pA) (e) ; T58S minK (scale bar = 10 , 000 pA) (f) ; T58A minK (scale bar = 5000 pA) (g)

  • Rise time was not determined (nd) for V72A KCNE3 because of unusual activation kinetics that did not saturate

  • (V72S , n = 7 ; V72A , n = 7 ; V72Y , n = 7 ; V72I , n = 6 ; V72C , and n = 5.) That two sets of isosteric residues (threonine and valine , cysteine and serine) gave dramatically different currents solely with the introduction of a hydroxyl group suggests that this group has an important role in control KvLQT1 gating

Reference #1 (Melman YF et al.): V72C
  • The support for this hypothesis comes from V72C-KCNE3

  • Recordings are from CHO cells (obtained as in Fig. 1 ) transfected with KvLQT1 cDNA with V72S KCNE3 (scale bar = 4000 pA) (a) ; V72C KCNE3 (scale bar = 4000 pA) (b) ; V72A KCNE3 (scale bar = 5000 pA) (c) ; V72I KCNE3 (scale bar = 4000 pA) (d) ; V72Y KCNE3 (scale bar = 9000 pA) (e) ; T58S minK (scale bar = 10 , 000 pA) (f) ; T58A minK (scale bar = 5000 pA) (g)

  • (V72S , n = 7 ; V72A , n = 7 ; V72Y , n = 7 ; V72I , n = 6 ; V72C , and n = 5.) That two sets of isosteric residues (threonine and valine , cysteine and serine) gave dramatically different currents solely with the introduction of a hydroxyl group suggests that this group has an important role in control KvLQT1 gating

Reference #1 (Melman YF et al.): V72I
  • V72I-KCNE3 , a mutant that introduces a larger aliphatic residue , retained voltage-independent current and rapid activation characteristic of KCNE3 (Fig. 4 d)

  • Recordings are from CHO cells (obtained as in Fig. 1 ) transfected with KvLQT1 cDNA with V72S KCNE3 (scale bar = 4000 pA) (a) ; V72C KCNE3 (scale bar = 4000 pA) (b) ; V72A KCNE3 (scale bar = 5000 pA) (c) ; V72I KCNE3 (scale bar = 4000 pA) (d) ; V72Y KCNE3 (scale bar = 9000 pA) (e) ; T58S minK (scale bar = 10 , 000 pA) (f) ; T58A minK (scale bar = 5000 pA) (g)

  • (V72S , n = 7 ; V72A , n = 7 ; V72Y , n = 7 ; V72I , n = 6 ; V72C , and n = 5.) That two sets of isosteric residues (threonine and valine , cysteine and serine) gave dramatically different currents solely with the introduction of a hydroxyl group suggests that this group has an important role in control KvLQT1 gating

Reference #1 (Melman YF et al.): V72S
  • In substituting the hydroxylated residue serine into KCNE3 (V72S) , we observed slow voltage-dependent activation with sigmoidal kinetics and no voltage-independent constitutive current (Fig. 4 a)

  • Recordings are from CHO cells (obtained as in Fig. 1 ) transfected with KvLQT1 cDNA with V72S KCNE3 (scale bar = 4000 pA) (a) ; V72C KCNE3 (scale bar = 4000 pA) (b) ; V72A KCNE3 (scale bar = 5000 pA) (c) ; V72I KCNE3 (scale bar = 4000 pA) (d) ; V72Y KCNE3 (scale bar = 9000 pA) (e) ; T58S minK (scale bar = 10 , 000 pA) (f) ; T58A minK (scale bar = 5000 pA) (g)

  • (V72S , n = 7 ; V72A , n = 7 ; V72Y , n = 7 ; V72I , n = 6 ; V72C , and n = 5.) That two sets of isosteric residues (threonine and valine , cysteine and serine) gave dramatically different currents solely with the introduction of a hydroxyl group suggests that this group has an important role in control KvLQT1 gating

Reference #1 (Melman YF et al.): V72T
  • e , V72T KCNE3 (scale bar = 10 , 000 pA)

  • g , T71F / V72T KCNE3 (scale bar = 700 pA)

  • i , V72T / G73L KCNE3 (scale bar = 2000 pA)

  • (T71F , n = 5 ; G73L , n = 5 ; T71F / V72T , n = 8 ; T71F / V72T , n = 8 ; and T71F / G73L , n = 6.) Fig. 1 , e-i , shows currents from KCNE3 with minK-substituted amino acids within the activation triplet

  • All of the mutants containing the substitution V72T , either alone (Fig. 1 e) or in combination with another residue within the triplet (Fig. 1 , g and i) , abolished the usual KCNE3-mediated constitutive current and exhibited slow sigmoidal-type activation kinetics that resemble minK

  • These two mutants contain a threonine located one turn up (N terminus) or one turn down the transmembrane alpha -helix of minK and , hence , would face the same direction as the threonine in V72T KCNE3

  • This current was nearly identical to that produced by the V72T KCNE3 mutant , suggesting the need for a hydroxyl group at this position in producing slow sigmoidal voltage-dependent activation

Reference #1 (Melman YF et al.): V72Y
  • Recordings are from CHO cells (obtained as in Fig. 1 ) transfected with KvLQT1 cDNA with V72S KCNE3 (scale bar = 4000 pA) (a) ; V72C KCNE3 (scale bar = 4000 pA) (b) ; V72A KCNE3 (scale bar = 5000 pA) (c) ; V72I KCNE3 (scale bar = 4000 pA) (d) ; V72Y KCNE3 (scale bar = 9000 pA) (e) ; T58S minK (scale bar = 10 , 000 pA) (f) ; T58A minK (scale bar = 5000 pA) (g)

  • (V72S , n = 7 ; V72A , n = 7 ; V72Y , n = 7 ; V72I , n = 6 ; V72C , and n = 5.) That two sets of isosteric residues (threonine and valine , cysteine and serine) gave dramatically different currents solely with the introduction of a hydroxyl group suggests that this group has an important role in control KvLQT1 gating

  • Although V72Y KCNE3 has both rapid and slow activation , there is a significant voltage-independent component and no sigmoidal minK-like kinetics (Fig. 4 e) , suggesting that a hydrophobic group keeps the channel open in a voltage-independent manner and that precise spacing of the hydroxyl group is necessary to produce activation kinetics typical of I ks


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F.Horn (kchanneldbcmbi.ru.nl), 17-Aug-2005