KChannelDB: Extraction of mutation data from the literature

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This data was extracted from Medline abstracts and full texts (when available) in an automated manner.

The table below describes different point mutations at a given position and provides links to other documents. The sentence(s) where the point mutations in IRK2_HUMAN at position 71 were found are listed after the table.


Point mutations at position D71 in IRK2_HUMAN

ProteinIRK2_HUMAN (P63252)    Gene: KCNJ2,HIRK    (other point mutations)Swiss-Prot
Cross-reference table
Family page
PositionD71
General numbering (KChannelDB) -
DomainN-term
Family alignments Inward rectifiers (Kir)
Potassium channels 2 TMs
Other point mutations at the same position Position 50 in Inward rectifiers (Kir) family
Position 50 in Potassium channels 2 TMs family
Reference #1Ai T, Fujiwara Y, Tsuji K, Otani H, Nakano S, Kubo Y, Horie M
Circulation 2002 Jun 4;105(22):2592-4.
Medline
Text sourceHTML full text
Point mutationD71V (Not yet checked)
Reference #2Lopes CM, Zhang H, Rohacs T, Jin T, Yang J, Logothetis DE
Neuron 2002 Jun 13;34(6):933-44.
Medline
Text sourceHTML full text
Point mutationD71V (Not yet checked)
Reference #3Tristani-Firouzi M, Jensen JL, Donaldson MR, Sansone V, Meola G, Hahn A, Bendahhou S, Kwiecinski H, Fidzianska A, Plaster N, Fu YH, Ptacek LJ, Tawil R
J Clin Invest 2002 Aug;110(3):381-8.
Medline
Text sourceHTML full text
Point mutationD71V (Not yet checked)
Reference #4Hosaka Y, Hanawa H, Washizuka T, Chinushi M, Yamashita F, Yoshida T, Komura S, Watanabe H, Aizawa Y
J Mol Cell Cardiol 2003 Apr;35(4):409-15.
Medline
Text sourceHTML full text
Point mutationD71V (Not yet checked)
Reference #5Donaldson MR, Jensen JL, Tristani-Firouzi M, Tawil R, Bendahhou S, Suarez WA, Cobo AM, Poza JJ, Behr E, Wagstaff J, Szepetowski P, Pereira S, Mozaffar T, Escolar DM, Fu YH, Ptacek LJ
Neurology 2003 Jun 10;60(11):1811-6.
Medline
Text sourceHTML full text
Point mutationD71N (Not yet checked)
Reference #6Bendahhou S, Donaldson MR, Plaster NM, Tristani-Firouzi M, Fu YH, Ptacek LJ
J Biol Chem 2003 Dec 19;278(51):51779-85. Epub 2003 Oct 1.
Medline
Text sourceHTML full text
Point mutationD71V (Not yet checked)

Relevant sentences

Reference #5 (Donaldson MR et al.): D71N
  • These included six novel mutations (D71N , T75R , G146D , R189I , G300D , and R312C) as well as previously reported mutations R67W and R218W

  • Each mutation changed an amino acid of the Kir2.1 protein as follows: R67W (c427t) , D71N (g439a) , T75R (c452g) , G146D (g665a) , R189I (g794t) , R218W (c880t) , G300D (g1127a) , and R312C (c1162t)

  • As shown in figure 1 , three sporadic de novo mutations (T75R , D71N , and R67W) were found and three were familial (G146D , R189I , R218W)

  • This GYG (amino acids 144 to 146) sequence is vital for potassium selectivity in inward-rectifying and other potassium channels.18 A mutation changing the first glycine of this motif (G144S) in another kindred was shown to have a severe dominant negative effect on Kir2.1 current.6 T75R and D71N change residues in the N terminus with unknown contributions to channel function

  • Interestingly , a combination of syndactyly and a previously unreported dramatic shortening of toes was observed in the proband with D71N (figure 2A )

  • (A) Feet of proband from K7770 with mutation D71N

  • Mutations R67W , D71N , T75R , G146D , R189I , R218W , G300V , and R312C are shown in bold italic type

  • As shown in table 2 , patients with mutations in PIP2-related residues were not phenotypically distinct from those with mutations in residues that either had no in vitro involvement in PIP2 binding (D71N)17 or contribute to channel function through a different mechanism (G146D)

Reference #1 (Ai T et al.): D71V
  • In the study by Plaster et al , 6 D71V and R218W mutant subunits also failed to form functional homomeric channels

  • The coexpression of WT and D71V subunits induced an inwardly rectifying K + current with severely reduced amplitude , demonstrating that D71V has a strong dominant-negative effect

  • This suggests that that the functional modulation induced by T192A may be different from that induced by D71V or R218W

Reference #2 (Lopes CM et al.): D71V
  • Six of these mutations occur in the intracellular portion of the channel (D71V , R218Q / W , G300V , E303K , 314-315)

  • Two of the mutations (D71V and R218W) were shown to decrease current levels when coexpressed with wild-type subunits and showed no current when expressed alone (Plaster et al. , 2001(image) )

  • We coexpressed wild-type with mutant subunits for mutations occurring in each of the residues in the intracellular domains of Kir2.1 (D71V , R218Q , G300V , E303K , 314-315)

  • For two mutations (D71V and 314-315) , there was no decrease in the strength of PIP2 interactions

Reference #3 (Tristani-Firouzi M et al.): D71V
  • Confirming the pathogenic role of these mutations , in vitro electrophysiological analysis revealed that two of the mutations (D71V and R218W) have a dominant-negative effect on Kir2.1 channel function

  • *D71V and R218W data were obtained from ref

  • The clinical severity of illness in individuals with the strongest dominant-negative mutations (D71V , E303K , {Delta}314-315) was not appreciably different from that of subjects with weaker dominant-negative mutations (N216H , R218W , G300V , and V302M)

Reference #4 (Hosaka Y et al.): D71V
  • In previous studies , functional analyses were performed on three mutant subunits , D71V , R218W and T192A [7 and 13 ]

  • In the functional analyses of cells co-expressing WT- and mutant-KCNJ2 , the reduction in current was approximately 1 / 16 for D71V , 1 / 4 for R218W , 1 / 2 for T192A and 1 / 3 for G215D , compared with WT

Reference #6 (Bendahhou S et al.): D71V
  • Confocal microscopy fluorescence revealed three patterns of channel expression in the cell: 1) mutations D71V , N216H , R218Q , and pore mutations co-assemble and co-localize to the membrane with the WT and exert a dominant-negative effect on the WT channels ; 2) mutation V302M leads to channels that lose their ability to co-assemble with WT and traffic to the cell surface ; 3) deletions {Delta}95-98 and {Delta}314-315 lead to channels that do not traffic to the membrane but retain their ability to co-assemble with WT channels

  • All ATS missense mutations (filled circles , R67W , D71V / N , T75R , S136F , G144S , G146D , P186L , R189I , N216H , R218Q / W , G300V / D , V302M , E303K , R312C) and deletions (triangles , {Delta}95-98 and {Delta}314-315) are represented on the channel

  • WT cDNA was fused to DsRed fluorescent protein (DsRed) and mutant clones (D71V , T75R , S136F , G144S , N216H , G300V , V302M , E303K , amino acid deletion 95-98 , {Delta}SWLF , deletion 314-315 , {Delta}SY) were fused to EGFP and subcloned in the pDsRed and pEGFP vectors

  • To better understand the pathogenesis of this disease , we carried out mammalian cell expression studies of previously identified mutations D71V , {Delta}95-98 , S136F , G144S , N216H , R218Q , G300V , V302M , E303K , and {Delta}314-315

  • WT cDNA was fused to Ds red fluorescent protein (DsRed) and all mutant clones (D71V , S136F , G144S , N216H , R218Q , G300V , V302M , E303K , amino acid deletion 95-98 , {Delta}SWLF , and deletion 314-315 , {Delta}SY) were fused to enhanced green fluorescent protein (EGFP) and subcloned in the pDsRed and pEGFP vectors

  • RESULTS (image)TOP (image)ABSTRACT (image)INTRODUCTION (image)MATERIALS AND METHODS (image)RESULTS (image)DISCUSSION (image)REFERENCES Andersen-Tawil Syndrome Mutants Do Not Produce Current in HEK293 Cells—To correlate functional expression data with confocal microscopy fluorescence imaging , KCNJ2 wild type (WT) or mutant cDNAs (D71V , G144S , N216H , R218Q , G300V , V302M , E303K , amino acid deletion {Delta}95-98 , and {Delta}314-315) were fused to DsRed or EGFP at the COOH-terminal end and subcloned into the pIRES vector (Fig. 1 )

  • While D71V , G144S , N216H , R218Q , G300V , and E303K (-EGFP) co-localize to the membrane with the WT-DsRed producing a yellow color , {Delta}95-98-EGFP and {Delta}314-315-EGFP co-localize in the cytoplasm with WT-DsRed and also produce a yellow color (Fig. 4 )

  • Notice that fluorescence is localized to the membrane for WT , D71V , G144S , N216H , R218Q , G300V , and E303K

  • Three of these mutations are located in the NH2 terminus (R67W , D71V / N , and T75R) , one deletion occurs in the first transmembrane segment M1 ({Delta}95-98) , three mutations occur in the pore region (S136F , G144S and G146D) , and the remaining mutations reside in the COOH terminus of the Kir 2.1 channel (P186L , R189I , N216H , R218Q / W , G300V / D , V302M , E303K , R312C , and {Delta}314-315)

  • D71V , N216H , R218Q , R218W , G300V , and E303K mutant channels seem to co-assemble with the Kir2.1-WT channels and to co-localize to the plasma membrane in HEK293 cells

  • The D71V mutation does not alter channel assembly or trafficking or seem to be degraded , suggesting that the slide helix plays a role in the Kir2.1 channel gating

  • Protein extracts from HEK293 cells transfected with EGFP alone , WTKir2.1-EGFP , D71V-EGFP , {Delta}95-98-EGFP , {Delta}314-315-EGFP , and mock-transfected were analyzed by Western im munoblotting using anti-GFP antibody


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F.Horn (kchanneldbcmbi.ru.nl), 17-Aug-2005